Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40211
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    54   2e-08
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    48   2e-06
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   4.3  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   4.3  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.7  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   7.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 31/111 (27%), Positives = 52/111 (46%)
 Frame = +2

Query: 254 ETRKVVESLGHFDALVNNAAVAVCEPFLDCSPSNFDKTFDVNVKAVLNISQVVARKMIEN 433
           E RK      H+  L+NNA      P +D    +  K  DVN   V+ +++    ++I  
Sbjct: 69  EVRKFTNGSLHY--LINNAGAPCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRA 126

Query: 434 KTHGAIVNISSQXSKAALKDHTIYSLQKLLWML*LETMALELGPYGIKVNA 586
           K  G IVN++S  S      +  Y+  K   +    T+ +EL P+G++V +
Sbjct: 127 K--GTIVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTS 175


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 33/107 (30%), Positives = 50/107 (46%)
 Frame = +2

Query: 263 KVVESLGHFDALVNNAAVAVCEPFLDCSPSNFDKTFDVNVKAVLNISQVVARKMIENKTH 442
           KV+++LG  D L+NNA +A   PF   S  ++D    + ++      + V   M +    
Sbjct: 66  KVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKG 125

Query: 443 GAIVNISSQXSKAALKDHTIYSLQKLLWML*LETMALELGPYGIKVN 583
           G+IVNI S      L     YS  K       + +A+  GP GI+VN
Sbjct: 126 GSIVNIGSVNGHIYL-GSPAYSAAKAGLENLTKALAVRYGPLGIRVN 171


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 448 HCQHLISGIKGC-SERPHHLQSSKAALDAL---TRDYGFRTRTIWDQSKCINPTVIMTGM 615
           HC HLI G +G  S+ P  + ++K   D L    + YG +    W     I   +++   
Sbjct: 125 HCDHLIVGHRGANSDIPDSIANNKEIFDFLQSAAKKYGIQ---FWGPGSGIIHQIVLENY 181

Query: 616 AKDG 627
           A  G
Sbjct: 182 AAPG 185


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 311  AVAVCEPFLDCSPSNFDKTFDVNVKAVLNISQV 409
            ++++ E  +DCSPS  D+  D  ++A+  I ++
Sbjct: 1122 SLSILEKLVDCSPSIIDEQVDTILEALRKIIEL 1154


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 75  KGKRILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPSI 221
           KG   +VT            +L  +G N+V +SRT+  L++L  E  ++
Sbjct: 56  KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELETV 104


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 272 ESLGHFDALVNNAAVAVCEPFLDCSPSNFDKTFDVN 379
           E+     A VN+A+  V EPF+     NFD +  VN
Sbjct: 259 ETAEEIQAKVNDASADVHEPFVYNHFRNFDASMHVN 294


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 645 LSESAQPIFGHPSHYHSRIDAFTLIPYG 562
           ++E   P +G+P H H R  AF L  YG
Sbjct: 300 IAEMVVP-YGNPEHPHQRKHAFDLGEYG 326


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 320 VCEPFLDCSPSNFDKTFDV 376
           VC P  +  P N+D+ FDV
Sbjct: 589 VCPPACNTPPPNYDELFDV 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,740
Number of Sequences: 5004
Number of extensions: 49443
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)