Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40210
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    39   0.001
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    29   1.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   5.8  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.8  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   7.6  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   7.6  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 268 ALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISF 426
           A++FP+     L  +Y+  ++ SKEYI L+L GY     ++      +P  +F
Sbjct: 38  AVLFPIFGGVTLVLMYLALRYLSKEYIQLILQGYASLASIICFVRSFNPKTTF 90



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 690 LFLYDIFWVFGTNVM 734
           LF YDI++VFGT VM
Sbjct: 145 LFFYDIYFVFGTEVM 159



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 583 KHWIANNLFGIAFAINGVELLHLE 654
           KHW+A+N+   A A N + ++ ++
Sbjct: 110 KHWMASNILAWALAANSISIMRID 133


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 586 HWIANNLFGIAFAINGVELLHLEQRG 663
           HW AN L G+++A+NG  LL   Q G
Sbjct: 259 HWHANPLNGLSWALNGEYLLSGGQEG 284


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 125 SIEGIAIAYLSLVIMAILPIFFGSFRS 205
           +I+GI I Y  ++ + I  IFFG F S
Sbjct: 403 TIDGIYIIYFDMLALIIPTIFFGFFGS 429


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 6   KLYFCIIFYKKWQIWPQKY 62
           +L FCI+F+K W+    +Y
Sbjct: 73  RLNFCIVFFKNWEALYSQY 91


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 823  APRFKPVLPSKSWRKTTSLIEPRSSWRRSPMTLVPNTQKMSYR 695
            APR KP+LP +S   ++ +  P  +    P T  P     S R
Sbjct: 1014 APRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQR 1056


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 50  ASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLV 163
           A  + I  ++ + E ++   E+PPS +  I +  LSL+
Sbjct: 79  AFRLQIASKEFLNELVRRFPERPPSRLNKIQVMILSLI 116


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 385 VLALSHLLSPIISFLVPASIPNIPFHI--HFTRGERDNKQDIIITSSHPMM*SVCSSRSV 558
           +L + + L  +++F+   SI +IPFHI  H T  + +     I+    P        R +
Sbjct: 19  ILTIINSLVYLVNFISCPSIHSIPFHISTHLTSCQANISLLKIVGLHCPF-----HRRGI 73

Query: 559 LELGTWLKKHWIA 597
             L   +  HWIA
Sbjct: 74  ASLSVCVALHWIA 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,706,129
Number of Sequences: 5004
Number of extensions: 80141
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)