Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40210
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272... 77 1e-14
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 75 9e-14
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 42 5e-04
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601 39 0.006
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636... 33 0.37
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 31 1.5
01_07_0229 + 42161770-42164562 29 4.6
08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520... 29 6.1
>05_04_0436 +
21226656-21226695,21226819-21226934,21227059-21227210,
21227309-21227394,21227999-21228126,21228267-21228317,
21228574-21228660,21229418-21229487,21230334-21230470,
21230855-21230932,21231912-21231998
Length = 343
Score = 77.4 bits (182), Expect = 1e-14
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 256 SNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP 435
S + A+ FPLV S L L++ F+F SK+ +N +LT YFF LG+ AL L P I +P
Sbjct: 56 SKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLP 115
Query: 436 ASIPNIPFHIHFTRGERDNKQDIIITSSHPMM*SVCSSRSVLELGTW--LKKHWIANNLF 609
+ + R + + T S V +S W KKHW+ANN+
Sbjct: 116 KEWND---NAIVWRAPLFHSLSVEFTRS-----QVVASIPGFFFCIWYAAKKHWLANNVL 167
Query: 610 GIAFAINGVELLHL 651
GI+F I G+E+L L
Sbjct: 168 GISFCIQGIEMLSL 181
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 684 AGLFLYDIFWVFGTNVMGDRRQELRGSIKLV 776
+GLF YDIFWVF T VM + IKL+
Sbjct: 192 SGLFFYDIFWVFFTPVMVSVAKSFDAPIKLL 222
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 74.5 bits (175), Expect = 9e-14
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Frame = +1
Query: 256 SNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP 435
S + A+ FPLV S L L++ F+F SK+ +N +LT YFF LG+ AL L P I +P
Sbjct: 209 SKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLP 268
Query: 436 ------ASIPNIPFHIHFTRGERDNKQDIIITSSHPMM*SVCSSRSVLELGTWLKKHWIA 597
A + PF H E Q + +S P C + KKHW+A
Sbjct: 269 KEWNDNAIVWCAPF-FHSLSVEFTKSQ---VVASIPGF-FFC-------IWYAAKKHWLA 316
Query: 598 NNLFGIAFAINGVELLHL 651
NN+ GI+F I G+E+L L
Sbjct: 317 NNVLGISFCIQGIEMLSL 334
Score = 35.5 bits (78), Expect = 0.053
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 684 AGLFLYDIFWVFGTNVMGDRRQELRGSIKLV 776
AGLF YDIFWVF T VM + IKL+
Sbjct: 345 AGLFFYDIFWVFFTPVMVSVAKSFDAPIKLL 375
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 580 KKHWIANNLFGIAFAINGVELLHL 651
KKHW+ANN+ GIAF I G+E+L L
Sbjct: 429 KKHWLANNVLGIAFCIQGIEMLSL 452
>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
Length = 371
Score = 38.7 bits (86), Expect = 0.006
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 1/155 (0%)
Frame = +1
Query: 190 RFISIGEISKRAKESRRAS*NKSNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGY 369
R + G +R + AS ALM PL +SC+L L +F+ F S ++ L+T +
Sbjct: 32 RALDHGREMERNLDFSEASITLDRSQALMIPLASSCSL--LLMFYLFSS---VSHLVTAF 86
Query: 370 FFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNKQDIIITSSHPMM*SVCSS 549
+AL LSP ++ + PF Q +++ ++C
Sbjct: 87 TAVASAMALFFCLSPYVNCVRSRLGVGDPFVSRCCSKPFTRLQGLLV--------AICVG 138
Query: 550 RSVLELGTWL-KKHWIANNLFGIAFAINGVELLHL 651
V WL HW+ NNL GI+ I V + L
Sbjct: 139 TVV----AWLVSGHWLLNNLLGISICIAFVSHVRL 169
>10_08_1003 -
22162526-22163155,22163305-22163448,22163565-22163692,
22163794-22164066,22164416-22164689
Length = 482
Score = 32.7 bits (71), Expect = 0.37
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 222 SKRKQESVMKQVQQRCSDVPVGCIMCSFRTIYFLP 326
S +QE V+ + R S + +GC +C F +++ LP
Sbjct: 125 SSFRQEDVVPLARDRLSTIAIGCAICLFMSLFVLP 159
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 80 SVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLN 220
++ E I N+ + P S ++ + + Y + I ILPI G F S+ YL+
Sbjct: 356 NITELIDNLAKCPASKLQQLILKYNN--ITGILPISMGVFSSLVYLD 400
>01_07_0229 + 42161770-42164562
Length = 930
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 634 VELLHLEQRGDRLHPALRDSSCTTSSGC-SVPTSWVTVA 747
+E +LE R R+H +RD + + SSGC +W+ A
Sbjct: 428 LEAGYLEDREVRIHDIIRDMALSISSGCVDQSMNWIVQA 466
>08_02_0213 +
14349821-14350396,14351360-14351610,14351695-14352070,
14352210-14352341,14352425-14352600,14353176-14353299
Length = 544
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 20 HYFL*E-MADMASEIPINIEDSVKETIQNVTEKPPSSIE 133
+YF E + D+ ++I N+ V +Q++T+KPP+++E
Sbjct: 505 YYFEREFLVDVVNKICNNVR-GVNRVVQDITQKPPATVE 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,467,078
Number of Sequences: 37544
Number of extensions: 504996
Number of successful extensions: 1403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -