Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40210
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)                 56   3e-08
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)                   31   0.88 
SB_2888| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               29   4.7  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)                   28   8.2  

>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
          Length = 343

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%)
 Frame = +2

Query: 71  IEDSVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLNEQK 229
           IE +  ET +N T +  ++ EG+  AY  L++MA+LPIF+GSFRSV  + EQK
Sbjct: 291 IEAAANETAKNATGRAAATPEGMLTAYTGLIVMALLPIFYGSFRSVHAVLEQK 343


>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
          Length = 217

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 714 VFGTNVMGDRRQELRGSIKLVVFLQDLLGKTGLK-RGANFG 833
           V G+N +  RR E++G ++ V+  +D  GK GL+ R  N G
Sbjct: 25  VTGSNNLNLRRAEIKGGVREVILCKDNEGKLGLRVRAVNKG 65


>SB_2888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 805 VLPSKSWRKTTSLIEPRSSWRRSPMTLVPNT 713
           +LPS +W K  S I P  +W +   T++P++
Sbjct: 70  ILPSPNWMKCDSTILPSPNWMKWDTTILPSS 100


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 222  SKRKQESVMKQVQQRCSDVPVGCIMCSF 305
            SKRK+ S +K VQ+R   VP  C+ C+F
Sbjct: 987  SKRKRPS-LKTVQKRPKTVPWSCVACTF 1013


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 726 WYRTPRRCRTGRVPQSRMQPVTTLFQMQKLH 634
           W RT R C T R P ++ QPV  +     LH
Sbjct: 130 WLRTNRYCPTCRTPINQDQPVKKILGSMDLH 160


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 107 TEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETSPTKML 271
           T  PP+SI     A +      I+P  FG     KY  E+KK  E+H  +  +++
Sbjct: 703 TTAPPASIIDKLEAEVKEYDKKIIPALFGC-NLTKYREERKKLNEQHRVNMKQVI 756


>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
          Length = 363

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = +1

Query: 550 RSVLELGTWLKKHWIANNLFGIAFAINGVELLHLEQRGDRLHPALRDSSCTTSSGCSVPT 729
           R V   GT+ K  +   N   + FA++    +       R H    +SSC  +  C   T
Sbjct: 64  RLVPSFGTYQKLRFFGLNCLLLFFAVSSGGNMIFSFSAPRYHCGYGNSSCQPNKCCDNCT 123

Query: 730 SWVTVAKSFEALSNW 774
           S+V        +S W
Sbjct: 124 SYVFDGPFTSIVSEW 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,127,275
Number of Sequences: 59808
Number of extensions: 601919
Number of successful extensions: 1464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)