Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40210
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.77
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 31 0.77
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.77
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.77
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 30 2.4
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 30 2.4
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical pr... 29 5.4
U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 29 5.4
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 577 LKKHWIANNLFGIAFAINGVELLHL 651
LK+HWI NN+ G++F+I G+E LHL
Sbjct: 265 LKRHWITNNIIGVSFSILGIERLHL 289
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 687 GLFLYDIFWVFGTNVMGDRRQELRGSIKLVVFLQDL 794
GLF YDIFWVFGT+VM + + I L+ F QD+
Sbjct: 301 GLFFYDIFWVFGTDVMTSVAKGIDAPI-LLQFPQDI 335
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 262 KDALMFPLVASCALFGLYIFFQFFSKEYI 348
++A FP+ AS LFGLY+FF+ ++ ++
Sbjct: 66 REARKFPISASLVLFGLYLFFKPAAERFL 94
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 35 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 193
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 194 SFRSVKYLNEQKKA 235
F +K L+ + A
Sbjct: 2651 KFEELKKLSSARSA 2664
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 35 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 193
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 194 SFRSVKYLNEQKKA 235
F +K L+ + A
Sbjct: 2651 KFEELKKLSSARSA 2664
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 35 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 193
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 405 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 464
Query: 194 SFRSVKYLNEQKKA 235
F +K L+ + A
Sbjct: 465 KFEELKKLSSARSA 478
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 35 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 193
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 194 SFRSVKYLNEQKKA 235
F +K L+ + A
Sbjct: 2651 KFEELKKLSSARSA 2664
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +2
Query: 35 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 193
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 194 SFRSVKYLNEQKKA 235
F +K L+ + A
Sbjct: 2651 KFEELKKLSSARSA 2664
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 820 PRFKPVLPSKSWRKTTSLIEPRSSWRRSPMTLVPNTQKMSYRKSPAEQDAAGHHVVPDAE 641
P + V P ++ +T R R + L N Q+ + ++ P Q A HH+ P A
Sbjct: 257 PLHQGVAPHQAAPQTIQQTPARG--RPANAQLAQNAQQRNPQQVPMPQGVAPHHIPPQAL 314
Query: 640 APH 632
PH
Sbjct: 315 GPH 317
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -3
Query: 820 PRFKPVLPSKSWRKTTSLIEPRSSWRRSPMTLVPNTQKMSYRKSPAEQDAAGHHVVPDAE 641
P + V P ++ +T R R + L N Q+ + ++ P Q A HH+ P A
Sbjct: 257 PLHQGVAPHQAAPQTIQQTPARG--RPANAQLAQNAQQRNPQQVPMPQGVAPHHIPPQAL 314
Query: 640 APH 632
PH
Sbjct: 315 GPH 317
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 219 TSKRKQESVMKQVQQR-----CSDVPVGCIMCSFRTIYFLPILLKGVYQSATN 362
T RK +Q+Q+R C + + CI+ +YF+ +L G Y A N
Sbjct: 240 TDARKLSVATRQLQKRFFLVICIQLVLPCIILFIPVVYFIYSMLSGYYNQALN 292
>Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical
protein T24B8.2 protein.
Length = 411
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 800 TQQILEENHQFDRASKLLATV-THDVGTEHPEDV 702
T +++ N FDRAS +++ + T D+ EH D+
Sbjct: 150 TGEVVTYNEMFDRASNIISKIETFDIVLEHLNDI 183
>U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor
protein 139 protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 IFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP-ASIPNI 453
+F FF KE+ N +L F V+ L HL P S + AS+ N+
Sbjct: 297 VFAIFFVKEFRNFVLCKKHFVANVIPLQHLPVPRNSLMTAHASLQNL 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,315,958
Number of Sequences: 27780
Number of extensions: 441892
Number of successful extensions: 1349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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