Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40210
(840 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 0.66
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 24 1.5
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 6.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.1
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 8.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 8.1
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 25.4 bits (53), Expect = 0.66
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 225 CSFRYFTDRNEPKNIGKIAIITKLKYAIAIPSIL 124
CSF Y TD NE +I + T ++ IP IL
Sbjct: 197 CSFDYLTDTNEI----RIFVATIFTFSYCIPMIL 226
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 142 DCIFKFSDNGYFTY 183
DCIF S+ GYF Y
Sbjct: 69 DCIFVTSEPGYFLY 82
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.2 bits (45), Expect = 6.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 125 SIEGIAIAYLSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETSPT 262
++ GIA+ +L +++ +PI G R+ NE + E PT
Sbjct: 142 AVAGIAVVWLLAGLISFVPISLGLHRA----NEPVVLDDSKEEHPT 183
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNL 48
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNL 116
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +1
Query: 538 VCSSRSVLELGTWLKKHWIANNL 606
V +L WLK W+ NL
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNL 116
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 8.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 174 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 31
IAI+ + Y I + I EGG V + S +S +F+ E I AIS+
Sbjct: 419 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 468
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 8.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 174 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 31
IAI+ + Y I + I EGG V + S +S +F+ E I AIS+
Sbjct: 472 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 521
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,826
Number of Sequences: 438
Number of extensions: 6171
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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