Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40210
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03120.1 68415.m00265 signal peptide peptidase family protein...    79   3e-15
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    46   2e-05
At3g28770.1 68416.m03591 expressed protein                             31   1.3  
At2g44735.1 68415.m05566 expressed protein ; expression supporte...    30   2.2  
At5g61730.1 68418.m07746 ABC transporter family protein contains...    29   5.1  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    28   6.7  
At3g30350.1 68416.m03832 expressed protein                             28   6.7  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At5g41160.1 68418.m05003 purine permease-related similar to puri...    28   8.9  

>At2g03120.1 68415.m00265 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 344

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 44/132 (33%), Positives = 70/132 (53%)
 Frame = +1

Query: 256 SNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP 435
           S + A+ FPLV S  L  L++ F+F SK+ +N +LT YFF LG++ALS  L P I   +P
Sbjct: 56  SKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLP 115

Query: 436 ASIPNIPFHIHFTRGERDNKQDIIITSSHPMM*SVCSSRSVLELGTWLKKHWIANNLFGI 615
                 P++ +         + + +  +   + +            W KKHW+ANN+ G+
Sbjct: 116 N-----PWNDNLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAW-KKHWLANNILGL 169

Query: 616 AFAINGVELLHL 651
           +F I G+E+L L
Sbjct: 170 SFCIQGIEMLSL 181



 Score = 35.9 bits (79), Expect = 0.033
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +3

Query: 684 AGLFLYDIFWVFGTNVMGDRRQELRGSIKLVVFLQDLL 797
           AGLF YDIFWVF T VM    +     IKL+    D L
Sbjct: 192 AGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAL 229


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 42/159 (26%), Positives = 72/159 (45%)
 Frame = +1

Query: 175 FTYIFRFISIGEISKRAKESRRAS*NKSNKDALMFPLVASCALFGLYIFFQFFSKEYINL 354
           F   FR ++ G+  +R ++   AS    +  ALM P+++SC+L  L +F+ F S   ++ 
Sbjct: 27  FASAFRALNYGKEMERNRDFSEASITLDSSQALMIPVMSSCSL--LLMFYLFSS---VSQ 81

Query: 355 LLTGYFFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNKQDIIITSSHPMM* 534
           LLT +     V +L + LSP   ++      + PF            Q +++ +      
Sbjct: 82  LLTAFTAIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRCCSKSFTRIQGLLLVA------ 135

Query: 535 SVCSSRSVLELGTWLKKHWIANNLFGIAFAINGVELLHL 651
             C+   V  L   +  HW+ NNL GI+  I  V  + L
Sbjct: 136 --CAMTVVAWL---ISGHWVLNNLLGISICIAFVSHVRL 169


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 44   DMASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLNE 223
            D + E+  N E+S+K+  + V     SS + +     ++ I     +  GS  SVKY  +
Sbjct: 864  DRSVEVKANKEESMKKKREEVQRNDKSSTKEVRDFANNMDI----DVQKGSGESVKYKKD 919

Query: 224  QKKAGERHETSPT 262
            +KK G + E   T
Sbjct: 920  EKKEGNKEENKDT 932


>At2g44735.1 68415.m05566 expressed protein ; expression supported
           by MPSS
          Length = 248

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 605 CLE*RSPLTVWSFCIWNNVVTGCILLCGTLPV 700
           C E + P   WS C+++N +  C+  CG L V
Sbjct: 171 CFENQLPFRYWSKCVFSNGMFFCLSECGYLGV 202


>At5g61730.1 68418.m07746 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 940

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 301 LFGLYIFFQFFSK-EYINLLLTGYFFFLGVLALSHLLSPIIS 423
           LFG+   F+FF K  ++ + L  + F   ++ L+  LS IIS
Sbjct: 293 LFGMMFQFEFFLKNSFVLVFLLFFLFQFNMIGLAFALSSIIS 334


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 237 ESVMKQVQQRCSDVPVGCIMCSFRTIYFLPI 329
           + +++  QQR S + +G  +C   T++F PI
Sbjct: 197 DKLVELAQQRVSTIAIGTSICIIITVFFCPI 227


>At3g30350.1 68416.m03832 expressed protein
          Length = 163

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 738 HP*RWYRTPRRCRTGRVPQSRMQPVTTLFQMQKLHTVNGERYSKQIIGD 592
           HP   +  PR+ R GR  ++  + VT +        ++GE     I+ D
Sbjct: 50  HPKELFDAPRKVRFGRTTRAEKEQVTAMNNDSWSFKISGEHKQTNILAD 98


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +1

Query: 517 SHPMM*SVCSSRSVLELGTWLKKHWIANNLFGIAFAINGVELLHLEQRGDRLHPAL---- 684
           S+  +   CSS   LE G W+  + I +    +AFA  G  LL +  +   +H A     
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA--GNTLLDMYAKSGSIHDARKIFD 321

Query: 685 RDSSCTTSSGCSVPTSWVTVAKSFEALSNWWF 780
           R +     S  S+ T++       EA+  WWF
Sbjct: 322 RLAKRDVVSWNSLLTAYAQHGFGKEAV--WWF 351


>At5g41160.1 68418.m05003 purine permease-related similar to purine
           permease [Arabidopsis thaliana] GI:7620007; contains
           Pfam profile PF03151: Domain of unknown function, DUF250
          Length = 358

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +2

Query: 650 WNNVVTGCILLCGTLPVRHLLGVRYQRHG*PSPRASRLYQTGGFP 784
           W  V      L     +  LLG  Y   G  S   S L QTGGFP
Sbjct: 29  WILVFISIFFLISAQAISVLLGRFYYNEGGNSKWISTLVQTGGFP 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,222,772
Number of Sequences: 28952
Number of extensions: 414734
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)