Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40209
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 123 1e-28
03_01_0547 + 4093196-4093657,4094267-4095148 123 1e-28
03_01_0544 + 4082528-4082989,4083585-4084466 123 1e-28
03_01_0543 + 4076981-4077442,4078145-4079026 123 1e-28
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 1e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 48 7e-06
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 48 7e-06
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 40 0.002
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 33 0.35
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 29 4.3
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.7
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 29 5.7
06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469... 28 7.5
11_06_0516 + 24502645-24504507 28 9.9
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136... 28 9.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 123 bits (297), Expect = 1e-28
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI
Sbjct: 275 TEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK V +
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKK 432
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 123 bits (297), Expect = 1e-28
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI
Sbjct: 275 TEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK V +
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKK 432
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 123 bits (297), Expect = 1e-28
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI
Sbjct: 275 TEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK V +
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKK 432
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 123 bits (297), Expect = 1e-28
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI
Sbjct: 275 TEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK V +
Sbjct: 412 FAVRDMRQTVAVGVIKNVEKK 432
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = +1
Query: 283 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 462
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 463 DMRQTVAVGVIKAVNSR 513
T+AVG++ V +
Sbjct: 637 SQGNTIAVGIVSRVREQ 653
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/102 (29%), Positives = 52/102 (50%)
Frame = +1
Query: 190 LQILQLKSLCLTILVKSQTVTHSYWIAHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 369
L++L L + + IL+ Q H + + A + K + +K GK ++ P+ +KS
Sbjct: 576 LRVLVL-DVTIPILIGYQVEFHIHHVKEAARVT-KIVALLDKA----GKPSKTAPRFLKS 629
Query: 370 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 495
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 630 KQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/102 (29%), Positives = 52/102 (50%)
Frame = +1
Query: 190 LQILQLKSLCLTILVKSQTVTHSYWIAHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 369
L++L L + + IL+ Q H + + A + K + +K GK ++ P+ +KS
Sbjct: 576 LRVLVL-DVTIPILIGYQVEFHIHHVKEAARVT-KIVALLDKA----GKPSKTAPRFLKS 629
Query: 370 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 495
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 630 KQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCVESFQ 429
H+ C+ ++ E++D + K + K +K+G + + + +C+E+F
Sbjct: 345 HSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFS 404
Query: 430 EFPPLGRFAVR 462
+FP LGRF +R
Sbjct: 405 DFPQLGRFTLR 415
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 PSLTEVKSVG-DATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 203
P+ VK + + ++ A PG+NV + + ++ G+V K NP ++F
Sbjct: 217 PNKANVKVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFR 275
Query: 204 AQVIVL 221
AQ+ +L
Sbjct: 276 AQLQIL 281
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 6 LSLPPGQPSLTEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPK 185
L L P P T V V + + L GDNVG ++ + +++RG V K K
Sbjct: 303 LGLTPSGPLKTTVTGV-EMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVK 359
Query: 186 GAADFTAQVIVL 221
F A++ VL
Sbjct: 360 TYQKFEAEIYVL 371
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 713 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 633
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 59 CHPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW*LQKQPT 181
C +P TW + Q +R WLC W Q++PT
Sbjct: 212 CSILGTPNQRTWAE-GLQLAASIRFQFPQWLCSWDPQRRPT 251
>06_01_0649 +
4698384-4698780,4699047-4699144,4699673-4699697,
4699809-4699929,4700022-4700156,4700392-4700602
Length = 328
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 470 GRQLLSESSRLSTQGGWWWQGH*SCRKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKR 649
GR+ + S L ++G WQ ++G G E R + +LH P+ + E+
Sbjct: 38 GRRF-APGSALGSKGCLNWQDRGRSKRGVDGGEAVRIKAQVLAPQRQLLHDPEVLPLEEV 96
Query: 650 ATNS 661
AT S
Sbjct: 97 ATKS 100
>11_06_0516 + 24502645-24504507
Length = 620
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 69 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNG 248
E + EA+ + V S++E+ R GD + PP + V++ G+I G
Sbjct: 115 EQVHEALLAVDADIEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMGEIRRG 174
>02_01_0202 +
1366149-1366594,1368444-1368444,1368616-1368743,
1368943-1369039
Length = 223
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 93 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTQLL 263
GD+ G V RR V GD + P + DF V++L H S+GY LL
Sbjct: 20 GDSGGGEAPAAEVLRRRRVPVPGDGLSPIPMFSVDFRLFVLILPH----SHGYLVLL 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,684,844
Number of Sequences: 37544
Number of extensions: 483240
Number of successful extensions: 1299
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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