Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40209
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 132 3e-31
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 7e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.004
SB_41899| Best HMM Match : TLD (HMM E-Value=0.0052) 36 0.029
SB_59724| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 1.4
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_58746| Best HMM Match : RA (HMM E-Value=0.85) 30 2.5
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 3.3
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4) 29 4.4
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 29 4.4
SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13) 29 5.8
SB_21986| Best HMM Match : Flagellin_IN (HMM E-Value=8.3) 29 5.8
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 7.7
SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7) 28 7.7
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 132 bits (319), Expect = 3e-31
Identities = 58/79 (73%), Positives = 71/79 (89%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HTAHIACKF ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGR
Sbjct: 223 HTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGR 282
Query: 451 FAVRDMRQTVAVGVIKAVN 507
FAVRDM+QTVAVGVIK+V+
Sbjct: 283 FAVRDMKQTVAVGVIKSVD 301
Score = 119 bits (287), Expect = 2e-27
Identities = 57/83 (68%), Positives = 67/83 (80%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK FTAQVI
Sbjct: 146 TEVKSV-EMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVI 204
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
V+NHPG+I GY+ +LDC H H
Sbjct: 205 VMNHPGEIHAGYSPVLDC-HTAH 226
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 7e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 316 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 465
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 379 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 495
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_41899| Best HMM Match : TLD (HMM E-Value=0.0052)
Length = 228
Score = 36.3 bits (80), Expect = 0.029
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -2
Query: 181 GGLFLESPAT*PRRNSLT-----DTFFTLKPTLSPGTASWRASWVASPTDLTSVSDGWPG 17
GGLFL S + +SLT D L P LS T+SWR W AS SDGW
Sbjct: 29 GGLFLNSSSILMNASSLTLNYTRDLHTFLAPVLSSPTSSWRRCWHAS-------SDGWAA 81
Query: 16 GK 11
K
Sbjct: 82 SK 83
>SB_59724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLHTVIGLPTLPTLPA 292
RF + C+ SW NL+R+ T+ LP + TLPA
Sbjct: 25 RFVALRQCSLFNSWYNLERITTIAALPPVATLPA 58
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 280 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 408
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 301 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 441
EI R TG++TE+N ++ SG+ I +V + C+ Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301
>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLH---TVIGLPTLPTLPA 292
RF + C+ SW NL+R H T+ LPT+ TLPA
Sbjct: 25 RFVALRQCSLFNSWYNLEREHQITTIASLPTIATLPA 61
>SB_58746| Best HMM Match : RA (HMM E-Value=0.85)
Length = 820
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLH---TVIGLPTLPTLPA 292
RF + C+ SW NL+R H T+ LPT+ TLPA
Sbjct: 559 RFVALRQCSLFNSWYNLEREHQITTIAALPTIATLPA 595
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 385 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 474
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 743 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 603
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
Length = 598
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 420 VLPGIPTPRSFCCP*HEADSCCRSHQGC 503
+L G T R F C +CCRSH GC
Sbjct: 330 LLYGPVTRRLFGCNLSRKKNCCRSHAGC 357
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 274 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 453
T H+A + E ++ + T K V+ S + + +L S +EFP LG+
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162
Query: 454 AVR 462
A+R
Sbjct: 163 ALR 165
>SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13)
Length = 679
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLH---TVIGLPTLPTLPA 292
RF + HC+ SW N +R H T+ LP + TLPA
Sbjct: 25 RFVALLHCSLFNSWYNFEREHQITTIASLPPIATLPA 61
>SB_21986| Best HMM Match : Flagellin_IN (HMM E-Value=8.3)
Length = 179
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLH---TVIGLPTLPTLPA 292
RF + HC+ SW N +R H T+ LP + TLPA
Sbjct: 25 RFVALLHCSLFNSWYNFEREHQITTIASLPPIATLPA 61
>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 1142
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 133 RNCVVVMLLVTPKTTHLRVLQILQLKSLCLTIL--VKSQTVTHSYWIAHTAHIACKFAEI 306
RN +LV P + + VL ++ +++L L +L +++ T H Y T +++C +++
Sbjct: 648 RNVAKRPILVLPSSQLVLVLGVVCVQALFLVLLTLLRTPTARHFYPTVDTVYLSCSTSDL 707
>SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7)
Length = 156
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 227 SWSNLKRLH---TVIGLPTLPTLPA 292
SW NLKR H T+ LP + TLPA
Sbjct: 59 SWYNLKREHQITTISALPPIATLPA 83
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 194 RFYSSSHCA*-PSWSNLKRLHTVIGLPTLP---TLPA 292
RF + C+ SW NL+R H + +P+LP TLPA
Sbjct: 16 RFVALRQCSLFNSWYNLEREHQITTIPSLPPIATLPA 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,969,760
Number of Sequences: 59808
Number of extensions: 565267
Number of successful extensions: 1690
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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