Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40209
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 132 4e-31
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 132 4e-31
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 132 4e-31
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 3e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 32 0.42
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 32 0.42
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 32 0.42
Z72503-1|CAA96596.2| 617|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.9
AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn pro... 29 5.1
AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance t... 29 5.1
Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical pr... 28 6.8
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 28 6.8
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 28 6.8
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 28 6.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 132 bits (318), Expect = 4e-31
Identities = 61/78 (78%), Positives = 68/78 (87%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 330 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 389
Query: 451 FAVRDMRQTVAVGVIKAV 504
FAVRDMRQTVAVGVIK+V
Sbjct: 390 FAVRDMRQTVAVGVIKSV 407
Score = 118 bits (285), Expect = 4e-27
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI
Sbjct: 253 TEVKSV-EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVI 311
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQISNGYT +LDC H H
Sbjct: 312 IMNHPGQISNGYTPVLDC-HTAH 333
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 132 bits (318), Expect = 4e-31
Identities = 61/78 (78%), Positives = 68/78 (87%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 451 FAVRDMRQTVAVGVIKAV 504
FAVRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441
Score = 118 bits (285), Expect = 4e-27
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI
Sbjct: 287 TEVKSV-EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVI 345
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQISNGYT +LDC H H
Sbjct: 346 IMNHPGQISNGYTPVLDC-HTAH 367
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 132 bits (318), Expect = 4e-31
Identities = 61/78 (78%), Positives = 68/78 (87%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 451 FAVRDMRQTVAVGVIKAV 504
FAVRDMRQTVAVGVIK+V
Sbjct: 424 FAVRDMRQTVAVGVIKSV 441
Score = 118 bits (285), Expect = 4e-27
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI
Sbjct: 287 TEVKSV-EMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVI 345
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQISNGYT +LDC H H
Sbjct: 346 IMNHPGQISNGYTPVLDC-HTAH 367
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 316 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 492
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 493 IKAV 504
+K V
Sbjct: 528 LKVV 531
Score = 41.1 bits (92), Expect = 9e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 78 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTQ 257
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 258 LL 263
+L
Sbjct: 451 VL 452
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 268 AHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 447
AH+ + C F + +++ G+ + P+ I G +A+V + + +E+F LG
Sbjct: 510 AHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALG 569
Query: 448 RFAVRDMRQTVAVGVIKAV 504
R R T+A G+++ V
Sbjct: 570 RVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 268 AHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 447
AH+ + C F + +++ G+ + P+ I G +A+V + + +E+F LG
Sbjct: 528 AHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALG 587
Query: 448 RFAVRDMRQTVAVGVIKAV 504
R R T+A G+++ V
Sbjct: 588 RVTFRAGGNTIAAGIVEKV 606
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 163 SPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWVASPTDLTSVS 32
+P+T P S TD LKPT +P T S S + +P LT+++
Sbjct: 105 APSTAPAPTSTTDVL-ELKPTTAPATNSAETSAIVAPQPLTNLT 147
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 163 SPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWVASPTDLTSVS 32
+P+T P S TD LKPT +P T S S + +P LT+++
Sbjct: 105 APSTAPAPTSTTDVL-ELKPTTAPATNSAETSAIVAPQPLTNLT 147
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 163 SPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWVASPTDLTSVS 32
+P+T P S TD LKPT +P T S S + +P LT+++
Sbjct: 105 APSTAPAPTSTTDVL-ELKPTTAPATNSAETSAIVAPQPLTNLT 147
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 163 SPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWVASPTDLTSVS 32
+P+T P S TD LKPT +P T S S + +P LT+++
Sbjct: 105 APSTAPAPTSTTDVL-ELKPTTAPATNSAETSAIVAPQPLTNLT 147
>Z72503-1|CAA96596.2| 617|Caenorhabditis elegans Hypothetical
protein C26C6.3 protein.
Length = 617
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 41 SQICGRCHPRSSPRSCTWRQCRFQRKE 121
S+ CG C RS RSC ++C +R+E
Sbjct: 520 SRTCGGCGIRSRVRSCRSKKCEGRRQE 546
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 644 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 751
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn
protein.
Length = 566
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 378 CISRLDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVG--NPITVCNRLR 238
C +R + D +R T FF FC F G+V ++ N C LR
Sbjct: 211 CTNRSENSTQDINRATEALKTFFNVFCHFHGDVKAIDHKNAAKTCQILR 259
>AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 8, isoform a
protein.
Length = 566
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 378 CISRLDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVG--NPITVCNRLR 238
C +R + D +R T FF FC F G+V ++ N C LR
Sbjct: 211 CTNRSENSTQDINRATEALKTFFNVFCHFHGDVKAIDHKNAAKTCQILR 259
>Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical
protein K11E4.4 protein.
Length = 825
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 194 CSTLRWVVFGVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVGGI 57
CS R + +TTTQF + T +Y F ++GG+
Sbjct: 103 CSIFRRIALTCFVGVTTTQFCQMFERLIATVAKEKYEFQTQWLGGL 148
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +3
Query: 36 TEVKSV--G-DATHEALQEAVPGDNVGFNVKNVSVKELRRGYV 155
T VKSV G ++ + + +A PGD +G ++ + K++RRG V
Sbjct: 294 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +3
Query: 36 TEVKSV--G-DATHEALQEAVPGDNVGFNVKNVSVKELRRGYV 155
T VKSV G ++ + + +A PGD +G ++ + K++RRG V
Sbjct: 295 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +3
Query: 36 TEVKSV--G-DATHEALQEAVPGDNVGFNVKNVSVKELRRGYV 155
T VKSV G ++ + + +A PGD +G ++ + K++RRG V
Sbjct: 295 TTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 211 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 80
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,100,998
Number of Sequences: 27780
Number of extensions: 417938
Number of successful extensions: 1095
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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