Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40209
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 123 2e-28
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 123 2e-28
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 123 2e-28
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 123 2e-28
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 108 5e-24
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 58 9e-09
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 53 3e-07
At4g27900.2 68417.m04005 expressed protein 32 0.51
At4g27900.1 68417.m04004 expressed protein 32 0.51
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 6.3
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 28 6.3
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote... 28 6.3
At5g42860.1 68418.m05224 expressed protein 25 7.4
At1g40230.1 68414.m04784 hypothetical protein 28 8.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 123 bits (296), Expect = 2e-28
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI
Sbjct: 275 TEVKSV-EMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK+V+ +
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKK 432
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 123 bits (296), Expect = 2e-28
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI
Sbjct: 275 TEVKSV-EMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK+V+ +
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKK 432
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 123 bits (296), Expect = 2e-28
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI
Sbjct: 275 TEVKSV-EMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK+V+ +
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKK 432
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 123 bits (296), Expect = 2e-28
Identities = 57/83 (68%), Positives = 71/83 (85%)
Frame = +3
Query: 36 TEVKSVGDATHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVI 215
TEVKSV + HE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI
Sbjct: 275 TEVKSV-EMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVI 333
Query: 216 VLNHPGQISNGYTQLLDCPHCPH 284
++NHPGQI NGY +LDC H H
Sbjct: 334 IMNHPGQIGNGYAPVLDC-HTSH 355
Score = 118 bits (284), Expect = 5e-27
Identities = 52/81 (64%), Positives = 67/81 (82%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGR
Sbjct: 352 HTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGR 411
Query: 451 FAVRDMRQTVAVGVIKAVNSR 513
FAVRDMRQTVAVGVIK+V+ +
Sbjct: 412 FAVRDMRQTVAVGVIKSVDKK 432
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 108 bits (259), Expect = 5e-24
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
HT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGR
Sbjct: 18 HTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGR 77
Query: 451 FAVRDMRQTVAVGVIKAV 504
FA+RDMRQTV VGVIK+V
Sbjct: 78 FAIRDMRQTVGVGVIKSV 95
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 219 LNHPGQISNGYTQLLDCPHCPH 284
+NH GQI NGYT +LDC H H
Sbjct: 1 MNHLGQIKNGYTPVLDC-HTSH 21
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 271 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 450
H C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGR
Sbjct: 448 HAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGR 507
Query: 451 FAVRDMRQTVAVGVI 495
F +R +T+AVG +
Sbjct: 508 FTLRTEGKTIAVGKV 522
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 PSLTEVKSVGDATHE-ALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 203
P+ +VK V E ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFV 423
Query: 204 AQVIVL 221
AQ+ +L
Sbjct: 424 AQLQIL 429
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 52.8 bits (121), Expect = 3e-07
Identities = 34/110 (30%), Positives = 58/110 (52%)
Frame = +1
Query: 175 THLRVLQILQLKSLCLTILVKSQTVTHSYWIAHTAHIACKFAEIKEKVDRRTGKSTEVNP 354
THL L +L L+ IL+ SQ H H A A ++ +D +TG+ T+ +P
Sbjct: 560 THLE-LMVLVLEG-ATPILLGSQLEFH----VHHAKEAATVVKLVAMLDPKTGQPTKKSP 613
Query: 355 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 504
+ + + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 614 RCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 352 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 444
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 352 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 444
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 292 KFAEIKEKVDRRTGKSTEVNPKSI 363
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 75 LQEAVPGDNVGFNVKNVSVKELRRGYV 155
L EA+ GDNVG ++ + +++RG V
Sbjct: 343 LDEALAGDNVGLLLRGIQKADIQRGMV 369
>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
PIR:T10515
Length = 1249
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 294 FAGNVGSVGNPITVCNRLR 238
F GN G G+P++ CNR+R
Sbjct: 844 FLGNTGLCGSPLSRCNRVR 862
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 25.0 bits (52), Expect(2) = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 545 RKGHQGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNS 661
R H G++ A T FH+T +L SP G +++S
Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66
Score = 21.4 bits (43), Expect(2) = 7.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 401 PSLYV*SPSRNSH 439
P+ +V SPSR+SH
Sbjct: 24 PAYFVQSPSRDSH 36
>At1g40230.1 68414.m04784 hypothetical protein
Length = 303
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 199 LQLKSLCLTILVKSQTVTHSYWIAHTAH 282
L L LTI + QT+ HS + HTAH
Sbjct: 73 LSLDQTSLTISLPHQTLDHSITLDHTAH 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,069,624
Number of Sequences: 28952
Number of extensions: 383912
Number of successful extensions: 1062
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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