Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40207
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   125   5e-30
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   1.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.6  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   2.6  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    27   2.6  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    27   2.6  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   2.6  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    27   2.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   2.6  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   6.0  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  125 bits (302), Expect = 5e-30
 Identities = 56/86 (65%), Positives = 71/86 (82%)
 Frame = +1

Query: 1   IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 180
           +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISP
Sbjct: 121 VPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISP 180

Query: 181 FSYGLVVKQVYDSGTIFAPEILDINQ 258
           F+YG+ V  +YD G +F+PEILD+++
Sbjct: 181 FTYGMDVLTIYDQGNVFSPEILDVSE 206



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +3

Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
           EDL     +  + + A+SL   YPTI S  HS+ N +KNL+                K F
Sbjct: 207 EDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAF 266

Query: 438 IKDPSKF 458
           + DPS F
Sbjct: 267 LADPSAF 273



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 443 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLEL 273
           L  L+ G S+       SSDG    + + D ++  + SWV  ++R S  IS S  E+
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEV 137


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 455  LRWVLNE-LLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSL 279
            LR ++N  L D G   +  +C+ +D  ++++T    +     +++S    KS  + N   
Sbjct: 1012 LRPLVNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYK 1071

Query: 278  ELGTEI 261
            EL TE+
Sbjct: 1072 ELATEL 1077


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 103
           PPTT   +    +       +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 121 PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDINQR 261
           P  + G+     L    +SPFS  + +  +YD  T   P  L+I+Q+
Sbjct: 21  PALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQ 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,089
Number of Sequences: 5004
Number of extensions: 46608
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)