Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40207
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 121 5e-28
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 121 5e-28
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 121 5e-28
03_02_0966 + 12783515-12783901 30 2.0
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 2.7
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 3.6
06_01_0080 + 644021-645463 29 3.6
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.6
04_04_0442 - 25229186-25229568,25229740-25232671 28 6.2
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 121 bits (292), Expect = 5e-28
Identities = 53/86 (61%), Positives = 69/86 (80%)
Frame = +1
Query: 1 IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 180
+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
Query: 181 FSYGLVVKQVYDSGTIFAPEILDINQ 258
FSYGLV+ VYDSG++F+PE+LD+ +
Sbjct: 186 FSYGLVITNVYDSGSVFSPEVLDLTE 211
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/67 (50%), Positives = 43/67 (64%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L KE+
Sbjct: 212 EDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEY 271
Query: 438 IKDPSKF 458
+KDPSKF
Sbjct: 272 LKDPSKF 278
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 121 bits (292), Expect = 5e-28
Identities = 53/86 (61%), Positives = 69/86 (80%)
Frame = +1
Query: 1 IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 180
+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
Query: 181 FSYGLVVKQVYDSGTIFAPEILDINQ 258
FSYGLV+ VYDSG++F+PE+LD+ +
Sbjct: 186 FSYGLVITNVYDSGSVFSPEVLDLTE 211
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/67 (50%), Positives = 43/67 (64%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L KE+
Sbjct: 212 EDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEY 271
Query: 438 IKDPSKF 458
+KDPSKF
Sbjct: 272 LKDPSKF 278
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 121 bits (292), Expect = 5e-28
Identities = 53/86 (61%), Positives = 69/86 (80%)
Frame = +1
Query: 1 IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 180
+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
Query: 181 FSYGLVVKQVYDSGTIFAPEILDINQ 258
FSYGLV+ VYDSG++F+PE+LD+ +
Sbjct: 186 FSYGLVITNVYDSGSVFSPEVLDLTE 211
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
+DL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L KE+
Sbjct: 212 DDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEY 271
Query: 438 IKDPSKF 458
+KDPSKF
Sbjct: 272 LKDPSKF 278
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 282 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 380
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +1
Query: 91 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 243
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 255 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 371
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>06_01_0080 + 644021-645463
Length = 480
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 105 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGG 4
I+D N N R K++EERG L+ GV GG
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGG 133
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 221 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 99
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 158 STC*TSLHSHMVLLLSRYMILELFLHLKFWTSTRGSPC 271
+TC H +LL R I++ F HL W SPC
Sbjct: 25 TTCHGLNHEGWLLLTLRKQIVDTFHHLDDWNPEDPSPC 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,843
Number of Sequences: 37544
Number of extensions: 327872
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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