Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40207
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         80   2e-15
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        30   2.1  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  30   2.1  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      29   4.8  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = +1

Query: 1   IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 141
           +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 105 VPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 105 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGG 4
           I+D  NS   +  R  K+LEERG L+  +GV GG
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGG 177


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 137  PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 21
            P   P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 242 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 69
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 68  VGMERAWK 45
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +1

Query: 31   EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 198
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 199  VKQVYDSGTIFAPEILDI 252
            VK ++ S T+  P  L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,684,367
Number of Sequences: 59808
Number of extensions: 351740
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)