Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40207
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   143   1e-34
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    29   4.3  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    29   4.3  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   9.8  
AF099914-6|AAC68760.3|  213|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  143 bits (346), Expect = 1e-34
 Identities = 61/84 (72%), Positives = 76/84 (90%)
 Frame = +1

Query: 1   IPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 180
           +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++P
Sbjct: 123 LPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTP 182

Query: 181 FSYGLVVKQVYDSGTIFAPEILDI 252
           FSYGLVV+QVYD GT++ PE+LD+
Sbjct: 183 FSYGLVVRQVYDDGTLYTPEVLDM 206



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/67 (47%), Positives = 42/67 (62%)
 Frame = +3

Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
           E+LR +F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L                K F
Sbjct: 209 EELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAF 268

Query: 438 IKDPSKF 458
           I DPSKF
Sbjct: 269 IADPSKF 275



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -2

Query: 419 SFFKLNLCDSSDGQKVLETIGDGMRG*SN----SWVSNSQRKSSYISNSSLELGTEILWL 252
           SF KL L  S DG +  E +G G    +N    +W   SQ ++ YIS +   L     + 
Sbjct: 143 SFGKLVLKGSFDGNQACELLGFGAPVYANRSIQTWFFPSQDQNVYISMAHGFLENISTFT 202

Query: 251 MSRISGAKIVPESY 210
            SR+S A+++ E++
Sbjct: 203 FSRVSSAQMLQETH 216


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 548 SDDDMGFGLFD 580
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 41  LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHMVLLLSRYMIL 220
           L+S   P+L  +Q       T   S      L+L+  PFST  T +HSH++  L  +++L
Sbjct: 251 LTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLI--PFSTAKTVIHSHIISFLIGFLLL 308


>AF099914-6|AAC68760.3|  213|Caenorhabditis elegans Hypothetical
           protein C40A11.2 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 302 SYISNSSLELGTEILWLMSRISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSP 123
           S++   S E   E+L +++      I+  SYT      + + E FN   +   E P L  
Sbjct: 101 SFLKIRSYETSEELLHIIANCKKTAILVISYTVHNDHLWNSPESFNF--QYVLENPKLDV 158

Query: 122 GFKMC 108
            FK C
Sbjct: 159 YFKQC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,811
Number of Sequences: 27780
Number of extensions: 263715
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)