Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40207
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.53 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.53 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.53 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 237
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 237
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  FLPSSFHPYQNFKGYY*NHQ 101
           FLP S+HP+Q+    Y  H+
Sbjct: 311 FLPPSYHPHQHHPSQYHPHR 330


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 260 LWLMSRISGAKIVPESYTCLTTRP 189
           LW  + I+ A+ +   YT + TRP
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRP 152


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 260 LWLMSRISGAKIVPESYTCLTTRP 189
           LW  + I+ A+ +   YT + TRP
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRP 152


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 126 TGLQDVYIVDDFN 88
           TG+ D+++ DD N
Sbjct: 114 TGISDLFVFDDLN 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,744
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)