Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40207
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 120 1e-27
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 120 1e-27
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 116 1e-26
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 33 0.14
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 31 0.56
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 28 6.9
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 120 bits (288), Expect = 1e-27
Identities = 53/82 (64%), Positives = 68/82 (82%)
Frame = +1
Query: 13 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYG 192
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYG
Sbjct: 129 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYG 188
Query: 193 LVVKQVYDSGTIFAPEILDINQ 258
LVV+ VYD+G++F+PE+LD+ +
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTE 210
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
+ L KF +G++ V +L+LA+ YPT+A+APH N +KN L KEF
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEF 270
Query: 438 IKDPSKF 458
+KDPSKF
Sbjct: 271 LKDPSKF 277
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 120 bits (288), Expect = 1e-27
Identities = 53/82 (64%), Positives = 68/82 (82%)
Frame = +1
Query: 13 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYG 192
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYG
Sbjct: 129 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYG 188
Query: 193 LVVKQVYDSGTIFAPEILDINQ 258
LVV+ VYD+G++F+PE+LD+ +
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTE 210
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/67 (40%), Positives = 39/67 (58%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
+ L KF +G++ V +L+LA+ YPT+A+APH N +KN L KE+
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEY 270
Query: 438 IKDPSKF 458
+KDPSKF
Sbjct: 271 LKDPSKF 277
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 116 bits (280), Expect = 1e-26
Identities = 52/82 (63%), Positives = 67/82 (81%)
Frame = +1
Query: 13 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYG 192
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYG
Sbjct: 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYG 189
Query: 193 LVVKQVYDSGTIFAPEILDINQ 258
LVV+ VYD+G++F PE+L++ +
Sbjct: 190 LVVESVYDNGSVFNPEVLNLTE 211
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = +3
Query: 258 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEF 437
+DL KF AGV+ + ALSLAI YPT+A+APH N +KN+L KEF
Sbjct: 212 DDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEF 271
Query: 438 IKDPSKF 458
+KDP+KF
Sbjct: 272 LKDPTKF 278
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 31 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 195
E + L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 281 LELGTEILWLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCT 105
L +G E + S I +G+ PE+Y+ + PYE E + R +++ P +P +
Sbjct: 356 LNIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDA 412
Query: 104 SLMISIVPFEILVGME 57
L+ + EI G E
Sbjct: 413 ELVAATERMEINEGDE 428
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 PPTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 166
P TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 58 PKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,528
Number of Sequences: 28952
Number of extensions: 255913
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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