Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40205
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 88 2e-18
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 52 1e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 31 0.19
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 31 0.26
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 30 0.45
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 1.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 2.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.5
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 5.5
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 26 5.5
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 7.3
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 26 7.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 7.3
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.6
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 87.8 bits (208), Expect = 2e-18
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
IGA+G D L L + +Q R+ +Y H + M+ + A M+ T+LY KRFFPYYV +A
Sbjct: 56 IGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVA 115
Query: 432 GLDSDGKGCVYSYDPIGHCARHNFRA 509
G+D +GKG +YS+DP+G R RA
Sbjct: 116 GIDKEGKGEIYSFDPVGSYEREWCRA 141
Score = 56.4 bits (130), Expect = 5e-09
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +1
Query: 94 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVL 255
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++ + V+
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVI 56
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 509 GGSAAAQLQPLLDNQIGLKN 568
GGSAA + P LDNQ+ L N
Sbjct: 142 GGSAANFITPFLDNQVNLHN 161
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
+G TG D TL L + ++ +Y+ + + A ++S+ LY KRF PY+ V+A
Sbjct: 51 LGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVA 110
Query: 432 GLDSDGKGCVYSYDPIG 482
G+ +D + +D IG
Sbjct: 111 GVSNDNTPFICGFDSIG 127
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 121 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVL 255
NGGS VA+AG + I +D RL T + K+F + + T L
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYL 51
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 124 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLS 240
G +IV + D V+GADTR + G I ++ KKL +S
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLIS 73
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 30.7 bits (66), Expect = 0.26
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Frame = -2
Query: 342 ICYARVRTSASSLVEDASRLMCHTSSQSLQY-----CTLR*FEQLFLVSGIYGKS--SAE 184
+CY+ T + LVE R M H + S+ C R + + +S G S +
Sbjct: 240 LCYSLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTD 299
Query: 183 TSVCSDNGIIIAGDG---YNTTSVVRVGLETMLFRTR 82
C DNGI+IA G Y T V T+ R R
Sbjct: 300 ERFCIDNGIMIAQAGLLAYKTGDRCAVAESTITQRYR 336
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 553 LIVEERLQLCSSGTTARKLWRAQCPIGS*LYTHPLPS 443
LI E R L GTT + W A + +Y HP+ S
Sbjct: 134 LIRESRHVLLREGTTGARTWEAGMALAEYIYQHPVQS 170
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 49 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 180
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 313 CRCTNTSITNL*PLRQSHRCSQLCCI 390
CRCT T N+ L Q + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 216 VSGIYGKSSAETSVCSDNGIIIAGDGYN 133
V G G ++E VCSD G+ + DG N
Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 139 AIAGDDYAVIGADTRLSTGFSI 204
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 539 LLDNQIGLKNMQNVTEAPLPREKALGSSEGCVHQWLQKRDIYTGD 673
L+DN G+ MQ + E+ L +++ W+ I+ GD
Sbjct: 334 LIDNNQGIHRMQPCPNIRIAMERILRTAQEQSETWIGSSTIHLGD 378
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 227 CSNYLRVQYWSDWLL 271
C +Y + +YW DW+L
Sbjct: 26 CMSYGKKEYWEDWVL 40
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +2
Query: 575 NVT-EAPLPREKALGSSEG 628
NVT APLP++K+LGSS G
Sbjct: 162 NVTLGAPLPQQKSLGSSIG 180
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 699 SDDQNVRWKSPV*MSRFCS 643
+D++N+RW SPV +CS
Sbjct: 560 NDNKNLRWLSPVETKYYCS 578
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 74 MLCLVRNSIVSSPTRTTEVV----L*PSPAMIMPLSEQTLVSALDFPYIPETKKSCSNYL 241
+L LV + +V S T TT + L PS + + ++ A PY E K+ ++
Sbjct: 444 LLGLVLDELVFSTTSTTPLPALSHLFPSNMPLQLIQDKLRDLAAKHPYFEEVKRYGTDAN 503
Query: 242 RVQYWSDW 265
WS+W
Sbjct: 504 GDPLWSEW 511
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 309 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 398
R Q ++NK M T A M TM+++KR
Sbjct: 666 RWQFRTIKNNKDMQTKAKRAMRETMVFWKR 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,534,536
Number of Sequences: 5004
Number of extensions: 76254
Number of successful extensions: 229
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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