Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40205
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 103 2e-22
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 83 2e-16
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 53 3e-07
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 52 5e-07
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 42 8e-04
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 31 0.82
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 31 1.1
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 30 1.9
02_04_0641 - 24667637-24667753,24670088-24670324 29 4.4
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 29 4.4
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382 29 5.8
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 103 bits (246), Expect = 2e-22
Identities = 46/96 (47%), Positives = 65/96 (67%)
Frame = +3
Query: 222 KAVQII*EYSIGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRF 401
K ++ + ++ ++G D L + L AR +Y+H+HNK M+ PA+AQ+LS LYYKRF
Sbjct: 46 KICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRF 105
Query: 402 FPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRA 509
FPYY NVL GLDS+GKGCV++YD +G R + A
Sbjct: 106 FPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSA 141
Score = 59.7 bits (138), Expect = 3e-09
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +1
Query: 112 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVL 255
Y +NGG+ VAIAG DY V+ ADTRLS G++I TRD K+ +L++ L
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCAL 56
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 83.4 bits (197), Expect = 2e-16
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 21/107 (19%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
+ ++G D L R L A+ +YEH HNK M+ PA+AQ+LS LYYKRFFPYY NVL
Sbjct: 54 LASSGFQGDVKALQRNLTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLG 113
Query: 432 GLDSD---------------------GKGCVYSYDPIGHCARHNFRA 509
GLDS+ GKGCV++YD +G R + A
Sbjct: 114 GLDSEVAAHQYERMITTCENIFSSFAGKGCVFTYDAVGSYERTGYSA 160
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1
Query: 100 RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVL 255
RFE Y +NGG+ VA+AG DY V+ ADTRLS G+SI +RD K+ L++ VL
Sbjct: 3 RFEVYENNGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVL 54
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
IG +G D TL + L R ++Y+ + M A ++S +LY KRF PY+ V+A
Sbjct: 164 IGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIA 223
Query: 432 GLDSDGKGCVYSYDPIG 482
GL D + + + D IG
Sbjct: 224 GLGEDNEPFICTMDCIG 240
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 121 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSE 243
NG ++VA+ G + I +D RL D +++FK+ +
Sbjct: 120 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHD 160
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
IG +G D TL + L R ++Y+ + M A A ++S +LY KRF PY+ V+A
Sbjct: 60 IGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIA 119
Query: 432 GLDSDGKGCVYSYDPIG 482
GL + + + + D IG
Sbjct: 120 GLGDNDEPFICTMDCIG 136
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 121 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSE 243
NG ++VA+ G + I +D RL D +++FK+ +
Sbjct: 16 NGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHD 56
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVL 428
+GA+G D + T +Q + +Y+ +N ++T A A L R PYYV+ +L
Sbjct: 44 MGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLL 103
Query: 429 AGLDSDGKGCVYSYDPI 479
AG DSD +Y D I
Sbjct: 104 AGYDSDVGASLYYIDYI 120
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 133 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVL 255
++ + G D+AV+ ADT ++ D+ K+ L ++
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLM 44
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 124 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLER 261
G +IV + D V+ AD+R STG + R K+ +L+++ + R
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICR 70
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 124 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLER 261
G +IV + D V+ AD+R STG + R K+ +L+++ + R
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCR 70
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +2
Query: 509 GGSAAAQLQPLLDNQIGLKNMQNVTEAPLPRE-----KALGSS 622
GG++AA L P+L + +GL N PLP+E ALGSS
Sbjct: 111 GGASAAALSPILASSLGL-NRIKTRSGPLPQEGHRIAAALGSS 152
>02_04_0641 - 24667637-24667753,24670088-24670324
Length = 117
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 61 NFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGF 198
N P A+PGA R + +G I+GD YA +G D+ GF
Sbjct: 56 NTPAAALPGAGPLR---RSKSGTKSAKISGDIYADLGVDSEFEIGF 98
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 201 HIYQRPKKAVQII*EYSIGATGCWCDTL 284
HIY K A I EY+IG C DTL
Sbjct: 673 HIYDEDKLAFDIFHEYNIGENVCTPDTL 700
>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
Length = 441
Score = 28.7 bits (61), Expect = 5.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Frame = -2
Query: 342 ICYARVRTSASSLVEDASRLMCHTSSQSLQY-----CTLR*FEQLFLVSGIYGKS--SAE 184
+CY+ T + LVE R M H S+ + C R E + ++ G + +
Sbjct: 303 LCYSLQETLFAMLVEITERAMAHCDSKDVLIVGGVGCNERLQEMMRIMCSERGGRLFATD 362
Query: 183 TSVCSDNGIIIAGDG-----YNTTSVVRVGLETMLFRTR--HSIFRK 64
C DNG +IA G + T+ + T FRT H+I+R+
Sbjct: 363 DRYCIDNGAMIAYTGLLAYAHGMTTPLEESTFTQRFRTDEVHAIWRE 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,960,803
Number of Sequences: 37544
Number of extensions: 507868
Number of successful extensions: 1252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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