Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40205
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)        125   5e-29
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   50   3e-06
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score =  125 bits (301), Expect = 5e-29
 Identities = 57/105 (54%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
 Frame = +3

Query: 198 FHIYQRPK-KAVQII*EYSIGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQML 374
           F I+ R   K  ++     +G +G   D LTLT+ + AR+QMYEH+H K+M+  A+AQML
Sbjct: 111 FQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQML 170

Query: 375 STMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRA 509
           STMLYY+RFFPYY  N+LAGLDS+GKGCV+S+DP+G   R  +RA
Sbjct: 171 STMLYYRRFFPYYTYNILAGLDSEGKGCVFSFDPVGSYEREVYRA 215



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/73 (49%), Positives = 49/73 (67%)
 Frame = +1

Query: 37  YKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD 216
           Y +  +      Y     KQ  F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD
Sbjct: 58  YSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRD 117

Query: 217 QKKLFKLSESTVL 255
             K++KL+ STVL
Sbjct: 118 SPKVYKLTGSTVL 130



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/55 (56%), Positives = 37/55 (67%)
 Frame = +2

Query: 509 GGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALGSSEGCVHQWLQKRDIYTGD 673
           GGSA+A LQPLLDNQIG KN + V   PL R+KA+   +  V     +RDIYTGD
Sbjct: 216 GGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKD-VFTSAAERDIYTGD 269


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 252 IGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLA 431
           +G  G   D  T++  L+ R+ +YE    + +       M+S +LY +RF PY+V  V+A
Sbjct: 121 VGLPGLATDVQTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIA 180

Query: 432 GLD-SDGKGCVYSYDPIG 482
           GLD    +  + S D IG
Sbjct: 181 GLDPKTNEPFISSMDLIG 198



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 121 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSE 243
           NG +I+A+ G +   I AD RL       + D +K+F++ E
Sbjct: 77  NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGE 117


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 210 QRPKKAVQII*EYSIGA-TGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTML 386
           Q  KK ++I   Y +G   G   D     RLL  + ++YE  + + ++  A +++L+ M+
Sbjct: 57  QTVKKVIEIN-PYLLGTMAGGAADCSFWERLLAKQCRIYELRNKERISVAAASKILANMV 115

Query: 387 YY 392
           YY
Sbjct: 116 YY 117


>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 382 IVESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPV 260
           +V +  A + +V+ LL SC  +C L+  R +KV   HQ+ +
Sbjct: 165 MVSTAKAYSVIVLFLLVSCFLLCFLSYFRLLKVTRRHQRQI 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,516,418
Number of Sequences: 59808
Number of extensions: 586296
Number of successful extensions: 1387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)