Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40205
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 88 6e-18
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 88 6e-18
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 50 2e-06
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 33 0.32
AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic gl... 33 0.32
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 31 0.98
AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical... 31 0.98
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 30 1.7
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 30 1.7
AC199170-8|ABO33266.1| 469|Caenorhabditis elegans Hypothetical ... 29 5.2
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 28 9.1
U88180-12|AAO21402.1| 476|Caenorhabditis elegans Hypothetical p... 28 9.1
U88180-11|AAO21401.1| 566|Caenorhabditis elegans Hypothetical p... 28 9.1
U88180-10|AAO21403.1| 532|Caenorhabditis elegans Hypothetical p... 28 9.1
U88180-9|AAM22071.1| 517|Caenorhabditis elegans Hypothetical pr... 28 9.1
U88180-8|AAB42296.1| 607|Caenorhabditis elegans Hypothetical pr... 28 9.1
AL117207-15|CAB60407.2| 476|Caenorhabditis elegans Hypothetical... 28 9.1
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 28 9.1
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 28 9.1
AB049441-1|BAB15803.1| 450|Caenorhabditis elegans CeCHK2 protein. 28 9.1
AB041996-1|BAB20578.1| 476|Caenorhabditis elegans Ce-CDS-1 prot... 28 9.1
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 88.2 bits (209), Expect = 6e-18
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +3
Query: 201 HIYQRPKKAVQII*EYSIGAT-GCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS 377
+I R + +QI+ + I T G + D L L ++LQ+R+ Y ++ M+ A++LS
Sbjct: 77 NILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS 136
Query: 378 TMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRA 509
LYY+RFFPYY +LAG+D GKG V+SYDPIG R + A
Sbjct: 137 RNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSA 180
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/56 (35%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFKLSESTVL 255
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIIL 95
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 88.2 bits (209), Expect = 6e-18
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +3
Query: 201 HIYQRPKKAVQII*EYSIGAT-GCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS 377
+I R + +QI+ + I T G + D L L ++LQ+R+ Y ++ M+ A++LS
Sbjct: 77 NILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS 136
Query: 378 TMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRA 509
LYY+RFFPYY +LAG+D GKG V+SYDPIG R + A
Sbjct: 137 RNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSA 180
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/56 (35%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLS-TGFSIYTRDQKKLFKLSESTVL 255
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIIL 95
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +3
Query: 219 KKAVQII*EYSIGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 398
KK ++ + +G G D T+ + R +YE N+++ +++M+S + Y R
Sbjct: 40 KKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHR 99
Query: 399 FFPYYVSNVLAGLDSDGKGCVYSYDPIG 482
F Y+ ++AGLD K + D IG
Sbjct: 100 FGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 124 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSE 243
GG++VA+AGD+ I +D R+ + DQKK+ K+++
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTD 47
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 418 PTCWRVWTATVRDVYIVTTLSDTVRAITSARW---FRCCTA 531
P W++WTA + VT V +T W F CCTA
Sbjct: 564 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTA 604
>AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic
glutamate receptor GLR-5 protein.
Length = 425
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 418 PTCWRVWTATVRDVYIVTTLSDTVRAITSARW---FRCCTA 531
P W++WTA + VT V +T W F CCTA
Sbjct: 124 PLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTA 164
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 124 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSES 246
G +IVA+A V+GAD+R + G I + +K+ KL+ES
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTES 86
>AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.1 protein.
Length = 337
Score = 31.1 bits (67), Expect = 0.98
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = -2
Query: 342 ICYARVRTSASSLVEDASRLMCHTSSQSLQY-----CTLR*FEQLFLVSGIYGKS--SAE 184
+C++ T + L+E R M HTSS+ L C LR E + G + +
Sbjct: 231 LCFSLQETVFAMLIEITERAMAHTSSKELLIVGGVGCNLRLQEMASAMCAERGAHLFATD 290
Query: 183 TSVCSDNGIIIAGDG 139
C DNG +IA G
Sbjct: 291 ERFCIDNGAMIARAG 305
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 533 QPLLDNQIGLKNMQNVTEAPLPREKALGSSEG 628
+P D Q+G +QN+ E LPR KAL S G
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKALLSHHG 838
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 533 QPLLDNQIGLKNMQNVTEAPLPREKALGSSEG 628
+P D Q+G +QN+ E LPR KAL S G
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKALLSHHG 838
>AC199170-8|ABO33266.1| 469|Caenorhabditis elegans Hypothetical
protein T08D2.7 protein.
Length = 469
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 548 CRGAVAAVQQRNHRAEVMARTVSDRVVTIYTSLTVAVQTRQHVGYV 411
C A+A + + EVM + +V IY +TVA + + YV
Sbjct: 208 CSRAIAKTRDIQNEVEVMKKLSHPNIVAIYDCITVAKYSYMVIEYV 253
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 484 CPIGS*LYTHPLPSLSKPANTLDT*YGKNRL*YNIV 377
C + + + H +PSL P T D +GK L Y +V
Sbjct: 247 CAVYAFMCHHSIPSLITPMRTKDNVFGKIALVYGVV 282
>U88180-12|AAO21402.1| 476|Caenorhabditis elegans Hypothetical
protein T27A3.1d protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 608 PFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHRAEVMAR 489
P P L + +L++ DC G + ++++NH E+ A+
Sbjct: 3 PTPTRNSSPLDPSCALNELDCNGLMVILEKKNHDLELAAK 42
>U88180-11|AAO21401.1| 566|Caenorhabditis elegans Hypothetical
protein T27A3.1c protein.
Length = 566
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 608 PFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHRAEVMAR 489
P P L + +L++ DC G + ++++NH E+ A+
Sbjct: 3 PTPTRNSSPLDPSCALNELDCNGLMVILEKKNHDLELAAK 42
>U88180-10|AAO21403.1| 532|Caenorhabditis elegans Hypothetical
protein T27A3.1e protein.
Length = 532
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 608 PFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHRAEVMAR 489
P P L + +L++ DC G + ++++NH E+ A+
Sbjct: 44 PTPTRNSSPLDPSCALNELDCNGLMVILEKKNHDLELAAK 83
>U88180-9|AAM22071.1| 517|Caenorhabditis elegans Hypothetical
protein T27A3.1b protein.
Length = 517
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 608 PFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHRAEVMAR 489
P P L + +L++ DC G + ++++NH E+ A+
Sbjct: 44 PTPTRNSSPLDPSCALNELDCNGLMVILEKKNHDLELAAK 83
>U88180-8|AAB42296.1| 607|Caenorhabditis elegans Hypothetical
protein T27A3.1a protein.
Length = 607
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 608 PFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHRAEVMAR 489
P P L + +L++ DC G + ++++NH E+ A+
Sbjct: 44 PTPTRNSSPLDPSCALNELDCNGLMVILEKKNHDLELAAK 83
>AL117207-15|CAB60407.2| 476|Caenorhabditis elegans Hypothetical
protein Y60A3A.12 protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 548 CRGAVAAVQQRNHRAEVMARTVSDRVVTIYTSLTVAVQTRQHVGYV 411
C A+A + + EVM + +V IY +TVA + + YV
Sbjct: 209 CSRAIAKTRDIRNEVEVMKKLSHPNIVAIYDWITVAKYSYMVIEYV 254
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 207 YQRP-KKAVQII*EYSIGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTM 383
YQ+P +AV I+ +G T T L A + + H+ +K P + QMLSTM
Sbjct: 865 YQKPFNRAVMIL----LGVLADESVAKTRTELKAAAAEWF-HDCSKHQDLPRIVQMLSTM 919
Query: 384 L 386
L
Sbjct: 920 L 920
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 207 YQRP-KKAVQII*EYSIGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTM 383
YQ+P +AV I+ +G T T L A + + H+ +K P + QMLSTM
Sbjct: 865 YQKPFNRAVMIL----LGVLADESVAKTRTELKAAAAEWF-HDCSKHQDLPRIVQMLSTM 919
Query: 384 L 386
L
Sbjct: 920 L 920
>AB049441-1|BAB15803.1| 450|Caenorhabditis elegans CeCHK2 protein.
Length = 450
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 548 CRGAVAAVQQRNHRAEVMARTVSDRVVTIYTSLTVAVQTRQHVGYV 411
C A+A + + EVM + +V IY +TVA + + YV
Sbjct: 183 CSRAIAKTRDIRNEVEVMKKLSHPNIVAIYDWITVAKYSYMVIEYV 228
>AB041996-1|BAB20578.1| 476|Caenorhabditis elegans Ce-CDS-1
protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 548 CRGAVAAVQQRNHRAEVMARTVSDRVVTIYTSLTVAVQTRQHVGYV 411
C A+A + + EVM + +V IY +TVA + + YV
Sbjct: 209 CSRAIAKTRDIRNEVEVMKKLSHPNIVAIYDWITVAKYSYMVIEYV 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,675,247
Number of Sequences: 27780
Number of extensions: 435274
Number of successful extensions: 1262
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -