Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40204
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    32   0.12 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   0.61 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    28   1.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.5  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   2.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   4.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.7  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.7  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 602 PCIFFIE*TNVKIHHHSTAHSRPLLDIGLSQSAPLSPVCGSPHPLLAGHPVEV 760
           P + ++   N  +   ++A+S  L    ++++ PL+P   S HP L+  PV V
Sbjct: 226 PDLVYVSSDNPPVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSV 278


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 743 RQEVDEESRRPGSVVRIGRGLCPAVDDCGLLND 645
           R  V ++  RPGS + + R L P +D CG   D
Sbjct: 867 RGHVLQDIPRPGSPLYLVRALIPVIDSCGFETD 899


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 408 ILLDVALKSLINNSVRRFCPYDLGLTHKSTKLF 506
           I +  ++ SL+  S R   P+D+ +TH+S KLF
Sbjct: 260 IFITDSILSLLMCSTRSVYPWDIVITHQSGKLF 292


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 493  DLCVSPKS*GQNRLTELLIKLFNATSNKMSSITLIDVCQ-VILKSTTSLAVLN 338
            DLC +  +  +N   ++L ++FN+  +K+ +      CQ VI+K   S  + N
Sbjct: 1033 DLCENSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLVIMKLLHSQPIQN 1085


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  NQRLYLHMYLQKIHIKDKEQTNLFITQMF 107
           N+RLY H+YL     K++   N  +T +F
Sbjct: 463 NERLYNHVYLLAFESKNERVINYVLTNIF 491


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 466  GQNR--LTELLIKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVLTYNCCH 299
            GQN    TE+   + N  S+ ++   L+ +C+V+ K+ +SL V   + +L+      H
Sbjct: 1059 GQNHDFATEIWNAINNPKSDLLTKRNLLMICRVLYKAKSSLLVTLKIPSLIPRLRAIH 1116


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 646 SFNSP-QSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVP 789
           ++N+P Q +  G  PLP  T+   LRL S    R P      P +   P
Sbjct: 315 NYNAPFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSP 363


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = +3

Query: 123  RTHVPRHSNQGRLLQHQRVSHDL-------LIIEIIKEIVRRFYRF 239
            R  VPRHS++  L++ Q++  D+       + IE++K +V++   F
Sbjct: 1220 RVEVPRHSHRPPLIELQKMVDDIPTLPFQPIEIELLKRVVKQAEEF 1265


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 391 IDVCQVILKSTTSLAVLNTMTALVLTYNCCHRNLDWIDE 275
           + +C++  + T+S  +++   +L  +Y C  R LD  DE
Sbjct: 183 VRMCELACERTSSWLMVDAWESLQPSYTCTARVLDHFDE 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,654
Number of Sequences: 5004
Number of extensions: 70532
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)