Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40204
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 31 1.1
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 31 1.5
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 30 2.0
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 30 2.0
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 29 3.5
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483... 29 3.5
12_02_0297 + 17029850-17030047,17030814-17030973,17031666-170317... 29 4.6
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382 29 4.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.6
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 29 4.6
03_05_0505 + 24991699-24991921,24992100-24992665 29 6.0
03_01_0585 - 4331111-4331850,4331960-4332224 29 6.0
02_03_0027 + 14065720-14066328 29 6.0
10_01_0319 - 3504800-3505315,3505575-3505769 28 8.0
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 667 STAGHRPLPIRTTEPGLRLSSSTSCRPPCGGH 762
S +G PLP+ T P L +SS+ + P C H
Sbjct: 832 SASGPPPLPVMLTNPALSVSSALNGNPFCADH 863
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 643 SSFNSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQ--GGVPRLRSSGT 810
SS SP + G+ P P SS TS P GG+ PP+ G VP SSGT
Sbjct: 419 SSGTSPTTPGGGYSPSTPCNAPPSP--SSDTSPTTPGGGNYPPAPTIGNVPPSPSSGT 474
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 664 SSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQG-GVPRLRSSGT 810
S AG P P+ T+ P + PP GG PP+ G G P L GT
Sbjct: 373 SPPAGLTP-PVGTSPPTDFSPPAAGTTPPAGGFTPPAGGFGTPPLGGFGT 421
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 658 PQSSTAGHRPLPIRTTEPGLRLSSSTSC 741
P +++ H PLP R P LRLS+STSC
Sbjct: 10 PLAASPLHTPLPARP-RPQLRLSTSTSC 36
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 637 NTSSFNSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPP 771
+ ++ + ++ H PL T GL +SSS S PC G P
Sbjct: 278 DANAISGSSNTPDDHEPLLSTTRSTGLDISSSDSSDEPCNGDQVP 322
>02_02_0664 -
12747888-12747900,12748161-12748229,12748332-12748395,
12749540-12749558,12749777-12749843,12749934-12749953,
12750079-12750248,12751646-12751823
Length = 199
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 515 IYQVPSGVCSERYSGFYRGILKELLNRRQP 604
+Y PS C+E Y ++R I K+L +R+P
Sbjct: 106 VYIDPSSNCAEIYINYFRKICKKLEQQREP 135
>12_02_0297 +
17029850-17030047,17030814-17030973,17031666-17031782,
17032145-17032575
Length = 301
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 637 NTSSFNSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPP 750
N +F P +T H P +RT +R+SS++S PP
Sbjct: 50 NPQTFQRPIHTTQCHVPAFVRTGFRAMRVSSASSTPPP 87
>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
Length = 441
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 644 HHSTAHSRPLLDIGLSQS----APLSPVCGSPHPLLAGHPVEVMHHLARGASHGYGLPV 808
HH AH PLL L ++ A L+ VC + P + G P++V AR S +G P+
Sbjct: 121 HHHLAHLLPLLRAALGEAGVTPADLACVCYTKGPGM-GAPLQVAAAAARALSLLWGKPL 178
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = +1
Query: 676 GHRPLPIRTTEPGLRLSSSTSCRPPCGGH----APPSQGGVPRLRSSGTG 813
GH P P PG + T PP H APP P +G+G
Sbjct: 299 GHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSG 348
>02_05_1326 -
35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 671 LLDIGLSQSAPLSPVCGSPHPLLAGHP 751
L D +SQS + P+CGS PL+ G+P
Sbjct: 270 LSDSSISQSNNIKPICGSSAPLI-GYP 295
>03_05_0505 + 24991699-24991921,24992100-24992665
Length = 262
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +2
Query: 641 HHHSTAHSRPLLDIGLSQSAPLSPVCGSPHPLLAGHPVEVMHHLARGASHGYGLPVRVST 820
H H+T+H + S ++ C P P H ++ H G G+ P +
Sbjct: 33 HAHATSHMHKAGMHACASSTTVARCCAGPRPPATAHACALLRH-GGGDGDGWADPAAPNP 91
Query: 821 RR 826
RR
Sbjct: 92 RR 93
>03_01_0585 - 4331111-4331850,4331960-4332224
Length = 334
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 827 FSEWRPVPEDRNRGTPPWLGGA*PPQGGRQEVDEESRR-PGSVVRIGRGLCPA 672
+ +W D ++GT WLG P+ + D E+RR GS ++ PA
Sbjct: 119 WGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPA 171
>02_03_0027 + 14065720-14066328
Length = 202
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -3
Query: 756 STGWPARSG*GEPQTGLSGADWERPMSSSGRLW 658
+ WP +G G S A W R S G +W
Sbjct: 2 TANWPRAAGSGWRSRSASAATWRRRASGGGEVW 34
>10_01_0319 - 3504800-3505315,3505575-3505769
Length = 236
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 656 AHSRPLLDIGLSQSAPLSPVCGSPHPLLAG-HPVEVMHHLARGASHGYGLPVRVSTRR 826
A RP D G + A SP C P PL E +H L G+ YG+ + RR
Sbjct: 2 ACKRPAPDGGDAFLAAASPCCKKPRPLFTSIFNYEYLHKLGAGS---YGVVYKARDRR 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,476,581
Number of Sequences: 37544
Number of extensions: 493698
Number of successful extensions: 1355
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -