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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40204
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   0.10 
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.87 
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 31   1.5  
SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51)               30   2.0  
SB_55162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)                29   3.5  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   3.5  
SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5)                       29   3.5  
SB_32983| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13)                   29   6.1  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   6.1  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   8.1  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   8.1  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   8.1  

>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.5 bits (58), Expect(2) = 0.10
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 745  PPCGGHAPPSQGGVPRL 795
            PP GG APP  GG P L
Sbjct: 957  PPPGGSAPPPGGGAPPL 973



 Score = 25.8 bits (54), Expect(2) = 0.10
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 658  PQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPP 771
            P     G+ PLP     PG    S+ S  PP GG+APP
Sbjct: 922  PPPPPGGNAPLP--PPPPG---GSAPSQPPPPGGNAPP 954


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 676 GHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759
           G+RP  LP+R T  GL +  +TSC P  GG
Sbjct: 463 GYRPEKLPLRRTPDGLAILDNTSCGPVFGG 492


>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 460 NRLTELLIKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRN 293
           N +T + +     TS  M+SIT+  +   I+  T     + TMT + +T N  + N
Sbjct: 72  NTMTIITMTSITMTSITMTSITMTSITMTIITMTIITMTIITMTIITMTINTININ 127


>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 637 NTSSFNSPQSSTAG---HRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSG 807
           ++S  NSP SS       +  P+  T P    S+  S  P  GG+ P   G +  +RSSG
Sbjct: 519 SSSLRNSPSSSMDQLFQQKQAPMGGTTPNTMGSALNSSMPMLGGNTPSGGGAMTSMRSSG 578


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = +2

Query: 86   PVYHTNVCLKWESNPRPSP*QSRALTTAPTSQS*PVNYRNN*RD 217
            P+  T  CL W   PR S   S    TAPT Q    N RNN  D
Sbjct: 1498 PLRSTVRCLTWTDCPRTST-TSAPAATAPTRQGRVQNNRNNNND 1540


>SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51)
          Length = 128

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 454 LTELLIKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRN 293
           +  ++I   N TSN    I +  +  +I+       ++   +AL++  NC HR+
Sbjct: 12  INTIIITTINVTSNGFIIIVIGSIAIIIIIVVVVTIIITINSALIINNNCYHRH 65


>SB_55162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 637 NTSSFNSPQSSTAGHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759
           +T SF     +  G+RP  LP+R T  G  +   TSC P  GG
Sbjct: 9   STKSFLFTLCNKNGYRPEKLPLRRTPDGCAIWDHTSCGPWFGG 51


>SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05)
          Length = 363

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 611 FFIE*TNVKIHHHSTAHSRPLLDIGLSQSAPLSPVCG 721
           F I   N K  HHS +HS+PLL    S S   S + G
Sbjct: 74  FVIALNNAKHRHHSKSHSKPLLPHPPSSSIEASGMRG 110


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 833 PGFSEWRPVPEDRNRGTPPWLGGA*PPQGG 744
           P  S  RP P  R    PP +G A PP GG
Sbjct: 331 PSRSSQRPPPPSRGAPPPPSMGMAPPPVGG 360


>SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5)
          Length = 285

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 611 FFIE*TNVKIHHHSTAHSRPLLDIGLSQSAPLSPVCG 721
           F I   N K  HHS +HS+PLL    S S   S + G
Sbjct: 74  FVIALNNAKHRHHSKSHSKPLLPHPPSSSIEASGMRG 110


>SB_32983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 637 NTSSFNSPQSSTAGHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759
           +T SF     +  G+RP  LP+R T  G  +   T C P  GG
Sbjct: 9   STKSFLFTLCNKNGYRPEKLPLRRTPDGCAICDYTGCGPMFGG 51


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 696  PHH*ARSAALLIHFLPATLW 755
            PH  ARSAA   HF P  LW
Sbjct: 2990 PHRRARSAAWSYHFYPGELW 3009


>SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13)
          Length = 469

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691
           IFFI+   +  +++ST+ SR  LDIGLS
Sbjct: 316 IFFIKRKTLNSNNNSTSKSRDQLDIGLS 343


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691
           IFFI+   +  +++ST+ SR  LDIGLS
Sbjct: 588 IFFIKRKTLNSNNNSTSKSRDQLDIGLS 615


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 640 TSSFNSPQSSTAGHR---PLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSGT 810
           TS    P  S   +R   P+P    + G  ++  T C P   GH  PSQ   P++  SGT
Sbjct: 673 TSCIQCPAGSRCPNRTETPVPCLAGQSGTFVNG-THCIPCHVGHYCPSQSNKPQVCPSGT 731


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 818 WRPV--PEDRNRGTPPWLGGA*PPQGGRQEVD-EESRRPG 708
           WRP    E+ +RG   W GG     G R++   EE RRPG
Sbjct: 872 WRPKWQREEPDRGGDRWRGGDRRDDGPRRDAPREEWRRPG 911


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691
           IFFI+   +  +++ST  SR  LDIGLS
Sbjct: 587 IFFIKRKTLNSNNNSTCKSRDQLDIGLS 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,902,045
Number of Sequences: 59808
Number of extensions: 556579
Number of successful extensions: 1437
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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