BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40204 (833 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.10 SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87 SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 1.5 SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51) 30 2.0 SB_55162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05) 29 3.5 SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 3.5 SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5) 29 3.5 SB_32983| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1 SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13) 29 6.1 SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1 SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 8.1 SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 8.1 SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 28 8.1 >SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 27.5 bits (58), Expect(2) = 0.10 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +1 Query: 745 PPCGGHAPPSQGGVPRL 795 PP GG APP GG P L Sbjct: 957 PPPGGSAPPPGGGAPPL 973 Score = 25.8 bits (54), Expect(2) = 0.10 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +1 Query: 658 PQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPP 771 P G+ PLP PG S+ S PP GG+APP Sbjct: 922 PPPPPGGNAPLP--PPPPG---GSAPSQPPPPGGNAPP 954 >SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2342 Score = 31.5 bits (68), Expect = 0.87 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = +1 Query: 676 GHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759 G+RP LP+R T GL + +TSC P GG Sbjct: 463 GYRPEKLPLRRTPDGLAILDNTSCGPVFGG 492 >SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 166 Score = 31.1 bits (67), Expect = 1.2 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -2 Query: 460 NRLTELLIKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRN 293 N +T + + TS M+SIT+ + I+ T + TMT + +T N + N Sbjct: 72 NTMTIITMTSITMTSITMTSITMTSITMTIITMTIITMTIITMTIITMTINTININ 127 >SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 796 Score = 31.1 bits (67), Expect = 1.2 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +1 Query: 637 NTSSFNSPQSSTAG---HRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSG 807 ++S NSP SS + P+ T P S+ S P GG+ P G + +RSSG Sbjct: 519 SSSLRNSPSSSMDQLFQQKQAPMGGTTPNTMGSALNSSMPMLGGNTPSGGGAMTSMRSSG 578 >SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 1841 Score = 30.7 bits (66), Expect = 1.5 Identities = 19/44 (43%), Positives = 20/44 (45%) Frame = +2 Query: 86 PVYHTNVCLKWESNPRPSP*QSRALTTAPTSQS*PVNYRNN*RD 217 P+ T CL W PR S S TAPT Q N RNN D Sbjct: 1498 PLRSTVRCLTWTDCPRTST-TSAPAATAPTRQGRVQNNRNNNND 1540 >SB_11040| Best HMM Match : ATP-synt_8 (HMM E-Value=0.51) Length = 128 Score = 30.3 bits (65), Expect = 2.0 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = -2 Query: 454 LTELLIKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRN 293 + ++I N TSN I + + +I+ ++ +AL++ NC HR+ Sbjct: 12 INTIIITTINVTSNGFIIIVIGSIAIIIIIVVVVTIIITINSALIINNNCYHRH 65 >SB_55162| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 108 Score = 29.5 bits (63), Expect = 3.5 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 637 NTSSFNSPQSSTAGHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759 +T SF + G+RP LP+R T G + TSC P GG Sbjct: 9 STKSFLFTLCNKNGYRPEKLPLRRTPDGCAIWDHTSCGPWFGG 51 >SB_40476| Best HMM Match : zf-AN1 (HMM E-Value=5.9e-05) Length = 363 Score = 29.5 bits (63), Expect = 3.5 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +2 Query: 611 FFIE*TNVKIHHHSTAHSRPLLDIGLSQSAPLSPVCG 721 F I N K HHS +HS+PLL S S S + G Sbjct: 74 FVIALNNAKHRHHSKSHSKPLLPHPPSSSIEASGMRG 110 >SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) Length = 514 Score = 29.5 bits (63), Expect = 3.5 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -1 Query: 833 PGFSEWRPVPEDRNRGTPPWLGGA*PPQGG 744 P S RP P R PP +G A PP GG Sbjct: 331 PSRSSQRPPPPSRGAPPPPSMGMAPPPVGG 360 >SB_32611| Best HMM Match : TP2 (HMM E-Value=4.5) Length = 285 Score = 29.5 bits (63), Expect = 3.5 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +2 Query: 611 FFIE*TNVKIHHHSTAHSRPLLDIGLSQSAPLSPVCG 721 F I N K HHS +HS+PLL S S S + G Sbjct: 74 FVIALNNAKHRHHSKSHSKPLLPHPPSSSIEASGMRG 110 >SB_32983| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 107 Score = 29.1 bits (62), Expect = 4.6 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = +1 Query: 637 NTSSFNSPQSSTAGHRP--LPIRTTEPGLRLSSSTSCRPPCGG 759 +T SF + G+RP LP+R T G + T C P GG Sbjct: 9 STKSFLFTLCNKNGYRPEKLPLRRTPDGCAICDYTGCGPMFGG 51 >SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4247 Score = 28.7 bits (61), Expect = 6.1 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 696 PHH*ARSAALLIHFLPATLW 755 PH ARSAA HF P LW Sbjct: 2990 PHRRARSAAWSYHFYPGELW 3009 >SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13) Length = 469 Score = 28.7 bits (61), Expect = 6.1 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +2 Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691 IFFI+ + +++ST+ SR LDIGLS Sbjct: 316 IFFIKRKTLNSNNNSTSKSRDQLDIGLS 343 >SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 965 Score = 28.7 bits (61), Expect = 6.1 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +2 Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691 IFFI+ + +++ST+ SR LDIGLS Sbjct: 588 IFFIKRKTLNSNNNSTSKSRDQLDIGLS 615 >SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) Length = 1023 Score = 28.3 bits (60), Expect = 8.1 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = +1 Query: 640 TSSFNSPQSSTAGHR---PLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSGT 810 TS P S +R P+P + G ++ T C P GH PSQ P++ SGT Sbjct: 673 TSCIQCPAGSRCPNRTETPVPCLAGQSGTFVNG-THCIPCHVGHYCPSQSNKPQVCPSGT 731 >SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) Length = 1217 Score = 28.3 bits (60), Expect = 8.1 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -1 Query: 818 WRPV--PEDRNRGTPPWLGGA*PPQGGRQEVD-EESRRPG 708 WRP E+ +RG W GG G R++ EE RRPG Sbjct: 872 WRPKWQREEPDRGGDRWRGGDRRDDGPRRDAPREEWRRPG 911 >SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) Length = 808 Score = 28.3 bits (60), Expect = 8.1 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 608 IFFIE*TNVKIHHHSTAHSRPLLDIGLS 691 IFFI+ + +++ST SR LDIGLS Sbjct: 587 IFFIKRKTLNSNNNSTCKSRDQLDIGLS 614 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,902,045 Number of Sequences: 59808 Number of extensions: 556579 Number of successful extensions: 1437 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1432 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2347493764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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