Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40204
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    30   1.8  
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    29   4.1  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   7.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   7.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   7.2  

>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = -1

Query: 710 GSVVRIGRGLCPAVDDCGLLNDDVF*HLFTQ*RKCKAAFCLRVPLEFLCRIRYTAQNTHR 531
           G+   +GRGL P      LL+D +    +   RKC+  F + + +     +   A+N+  
Sbjct: 252 GTATTLGRGLQP------LLHDAIISSEYKDFRKCQMLFVMSIQITNQSFLYRLAKNSFS 305

Query: 530 RVLDKFTLEKLCRF 489
             LD+F   ++C +
Sbjct: 306 ITLDRFYRIEVCEY 319


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 106 NICVINRFVCSLSFICIFCKYICRYSLW 23
           N C+   F     FICIF   IC +SLW
Sbjct: 5   NSCIKLLFFVINFFICIFGALICGFSLW 32


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 397 TLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRNLDWID 278
           TL+ + + I K+ T   ++      + T++CC+R + +ID
Sbjct: 603 TLLILLKSISKADTRTEIMQFFNEELSTHSCCYRRITYID 642


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 397 TLIDVCQVILKSTTSLAVLNTMTALVLTYNCCHRNLDWID 278
           TL+ + + I K+ T   ++      + T++CC+R + +ID
Sbjct: 603 TLLILLKSISKADTRTEIMQFFNEELSTHSCCYRRITYID 642


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 655 SPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVP 789
           SP    A   P P RT  P    + S    PP GG  PP + G P
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSP 297


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 655 SPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVP 789
           SP    A   P P RT  P    + S    PP GG  PP + G P
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSP 318


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 655 SPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVP 789
           SP    A   P P RT  P    + S    PP GG  PP + G P
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPP-PPPAGGSPPPPRAGSP 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,172,075
Number of Sequences: 27780
Number of extensions: 416856
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)