Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40204
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 733 TSCRPPCGGHAPPSQG 780
           ++ R P GG  PPS G
Sbjct: 399 SAVRSPAGGQLPPSAG 414


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 41  YVFTKNTYKRQRANKPVYHTNVCLKWESNPRPSP 142
           Y +  N Y     NK +Y+  + ++    P P P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVP 129


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 41  YVFTKNTYKRQRANKPVYHTNVCLKWESNPRPSP 142
           Y +  N Y     NK +Y+  + ++    P P P
Sbjct: 96  YNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVP 129


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 126 THVPRHSNQGRLLQHQRVSHD 188
           +HV R    G L  HQR S D
Sbjct: 4   SHVVRGIEHGGLYYHQRCSRD 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,467
Number of Sequences: 438
Number of extensions: 5086
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)