Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40204
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    31   0.94 
At5g38640.1 68418.m04673 eukaryotic translation initiation facto...    30   1.6  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    29   2.9  
At4g31550.3 68417.m04481 WRKY family transcription factor contai...    29   5.0  
At4g31550.2 68417.m04480 WRKY family transcription factor contai...    29   5.0  
At4g31550.1 68417.m04479 WRKY family transcription factor contai...    29   5.0  
At4g19200.1 68417.m02833 proline-rich family protein contains pr...    28   6.6  
At2g40070.1 68415.m04923 expressed protein                             28   6.6  
At2g35530.1 68415.m04352 bZIP transcription factor family protei...    28   6.6  
At4g28770.1 68417.m04114 expressed protein                             28   8.8  

>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 439 IKLFNATSNKMSSITLIDVCQVILKSTTSLAVLNTMTALVL 317
           + L  AT+  +  +T + V QVI + +T   ++NTM  L+L
Sbjct: 167 LALVTATTGILEKVTFLQVNQVITRYSTEAMLVNTMGVLIL 207


>At5g38640.1 68418.m04673 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41111 Translation initiation factor eIF-2B delta
           subunit (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF01008: Initiation
           factor 2 subunit family
          Length = 642

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +1

Query: 652 NSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSGT 810
           + P SST   +P PI  T      SSS+S   P G    P     PRL SS T
Sbjct: 24  SQPDSSTQQQQPDPIAATSA----SSSSSTISPSGNSLSPVMIPPPRLNSSDT 72


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 815 RPVPEDRNRGTPPWLGGA*PPQGGRQEVDEESRRPGSVVR 696
           +P P    RGTPP    A P +G R+  D +S++P S V+
Sbjct: 396 KPAPSGPPRGTPP----AKPSKGKRKLNDGDSKKPSSSVQ 431


>At4g31550.3 68417.m04481 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 232

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 695 SAPLSPVCGSPHPLLAGHP 751
           SAPL PV  S  P LAGHP
Sbjct: 174 SAPLQPVNSSGKPPLAGHP 192


>At4g31550.2 68417.m04480 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 695 SAPLSPVCGSPHPLLAGHP 751
           SAPL PV  S  P LAGHP
Sbjct: 174 SAPLQPVNSSGKPPLAGHP 192


>At4g31550.1 68417.m04479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 325

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 695 SAPLSPVCGSPHPLLAGHP 751
           SAPL PV  S  P LAGHP
Sbjct: 174 SAPLQPVNSSGKPPLAGHP 192


>At4g19200.1 68417.m02833 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 179

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 748 PCGGHAPPSQGGVP 789
           P GGH PP+QGG P
Sbjct: 20  PGGGHYPPAQGGYP 33


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 652 NSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSS 804
           +S +S+   H     +T+ PGL  SS  S R P     P S+   P  RSS
Sbjct: 145 SSTESAARNHLTSRQQTSSPGLSSSSGAS-RRPSSSGGPGSRPATPTGRSS 194


>At2g35530.1 68415.m04352 bZIP transcription factor family protein
           contains Pfam domain PF00170: bZIP transcription factor;
           similar to G-Box binding protein 2 (GI:5381313)
           [Catharanthus roseus].
          Length = 409

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 637 NTSSFNSPQSSTAGHRPLPIRTTEPGLRLSSSTSCRPPCGGHAPPSQGGVPRLRSSG-TG 813
           N  S N PQ+ +AG   LP+  T P + ++++    PP   +      G P   S+G  G
Sbjct: 216 NGGSANGPQNGSAGTPILPVSQTVPIMPMTAAGVPGPPTNLNIGMDYWGAP--TSAGIPG 273

Query: 814 LHSE 825
           +H +
Sbjct: 274 MHGK 277


>At4g28770.1 68417.m04114 expressed protein
          Length = 281

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 391 IDVCQVILKSTTSLAVLNTMTALVLTYNCCHRNLDWIDEGASENNLRQVQENL 233
           ID+C+ +     ++ +L+ + ALVL      R  +  DE   EN + + ++NL
Sbjct: 191 IDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSRARDNL 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,001
Number of Sequences: 28952
Number of extensions: 386100
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)