Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40203
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   7.6  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 598 QWSWCYWKEQN*FNHYLYLHYILSKYVYYR*YHHMIPVYNMLCLYNQENLXDSGYGYRRN 777
           +W  C++K     ++Y Y  +  +   + R +   I  Y     YN  NL    Y  R N
Sbjct: 315 EWKSCFYK-----SYYEYRSWFHNVTNFSRIWVMHISAYWYYSAYNSPNLYTKNYHIRLN 369

Query: 778 NFP 786
           N P
Sbjct: 370 NKP 372


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 634 INSVPSNSTNSTASISYQNNR 572
           I+  PSN++N T S+ Y N+R
Sbjct: 402 ISMKPSNASNHTVSLGYLNDR 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,526
Number of Sequences: 5004
Number of extensions: 67735
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)