Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40203
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0331 - 7527010-7529352                                           30   2.6  
05_05_0137 - 22641577-22642119                                         29   3.5  
03_02_0611 + 9842550-9843035,9844313-9844416,9844586-9844814,984...    29   4.6  

>03_02_0331 - 7527010-7529352
          Length = 780

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 688 IGNIRILTGYNVGRGN-D*INSVPSNSTNSTASISYQNNRIGV 563
           +G+  +L   +VG    D + +  +N+TN TA+I+++   IGV
Sbjct: 451 VGDAHVLPACSVGENEGDTLKAYAANTTNPTATINFKGTVIGV 493


>05_05_0137 - 22641577-22642119
          Length = 180

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 684 PIVSPHDPCLQHAMPL*SGKFIXFRLRLPAKQFPMGAYFPGGSQ 815
           P+ + H+ CL  A+PL SG      LR  A++ P+ A   GG+Q
Sbjct: 54  PLTAGHESCLVSAVPL-SGTLF---LRSGARELPLAASNGGGAQ 93


>03_02_0611 +
           9842550-9843035,9844313-9844416,9844586-9844814,
           9846121-9846270
          Length = 322

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -2

Query: 639 IELILFL-PIAPTPLLPSVIKITV*VFGVPIHSSQADSLLV--MLSHTCFVTFFYLRQF 472
           + L+L++ PIA   LLP+ I +   V G+ I  ++ D+ +V  +L ++C   F  L  F
Sbjct: 203 MNLLLYMAPIAVILLLPATIFMEDNVVGITIELAKKDTTIVWLLLFNSCLAYFVNLTNF 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,738
Number of Sequences: 37544
Number of extensions: 395640
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)