Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40203
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       70   3e-12
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)                   29   6.2  
SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)                 28   8.2  

>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
 Frame = +1

Query: 259 LLDVSLSMSRPVISSDSIENHT-RSSIAVAAINSFLDYLSVHAKLEYVALVSFSSVHDVA 435
           LLDVSLSM R +   D  E    R  +A+  + +F D+LS   KLE+ ALV+FSS+ ++A
Sbjct: 6   LLDVSLSMLRRLQVVDEQEGLLQRRHLAIQGLYAFFDHLSSKFKLEFTALVAFSSLWEIA 65

Query: 436 VPFTRDFDSIRTKLPQIEEGDKTC 507
           VPFTRD++ ++     ++  DKTC
Sbjct: 66  VPFTRDYELLKQGCMSVDVYDKTC 89


>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 333 NSCRGNKFIFRLLKRSCQIRV 395
           N   GN+F+ R+L RSC+I V
Sbjct: 611 NKASGNEFVLRVLDRSCRILV 631


>SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)
          Length = 634

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 682 NIRILTGYNVGRGND*INSVPS--NSTNSTASISYQNNRIGVWCPHSFIT 539
           ++R    YN   GND + S  S  NSTN        NN    W PHSF+T
Sbjct: 111 SVRECPWYNQTLGNDTMTSNMSFANSTNPYGDGLIYNN----WTPHSFLT 156


>SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)
          Length = 552

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 50  YYSGNITLRCNATSH 6
           Y  GN+TL CNA+SH
Sbjct: 370 YLGGNVTLYCNASSH 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,790,451
Number of Sequences: 59808
Number of extensions: 495017
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)