Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40203
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    28   7.2  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 556 DTKHLYGYFDN*WKQWSWCYWKEQN*FNHYLYLHYILSKY-VYY 684
           D KH+   +D  +K W   YW      N Y Y  Y L    +YY
Sbjct: 434 DLKHMKHNYDTMYKHWYDMYWDADESANEYHYPPYKLFHIPIYY 477


>U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical
           protein D1014.4 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 268 VSLSMSRPVISSDSIENHTRSSIAVAAINSFLDYLSVHAKLEYVALVSFSSVHDVAVPFT 447
           VS +  +  +SS  +     +   V + NSF+   S    + Y  ++  SS++D++VP T
Sbjct: 140 VSKTFKKIPVSSQKMSRDIFNVCFVFSNNSFIQ--STRDAINYRQILVISSLNDISVPLT 197

Query: 448 RD 453
           +D
Sbjct: 198 QD 199


>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = -3

Query: 500 LSPSSICGSLVLILSK 453
           +SP S+CGS+V+ILSK
Sbjct: 128 ISPFSLCGSIVVILSK 143


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 497 SPSSICGSLVLILSK 453
           SP S+CGS+V+ILSK
Sbjct: 186 SPFSVCGSIVVILSK 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,532,429
Number of Sequences: 27780
Number of extensions: 378930
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)