Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40203
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35680.1 68417.m05065 expressed protein contains Pfam profile...    30   1.7  
At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    30   2.2  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    28   8.9  

>At4g35680.1 68417.m05065 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 503

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 651 VEVMIELILFLPIAPTPLLPSVIKITV*VFGVP-IHSSQADSLLVML 514
           V +   L+LFL   P P  P++ K T+ +  +P +  S +D  L+++
Sbjct: 196 VSMFRHLLLFLSTIPPPPSPAIFKTTIGLLSIPFVSPSLSDKSLILI 242


>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 436 QQHRELMKTTLTQRTLIWHERLSNLKMNLLPRQL 335
           Q H  L++T+L + + ++H  LS L ++L+PR +
Sbjct: 29  QIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDI 62


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = -1

Query: 829 LGPVIWEPPGK*APMGNCFAGNRSLNXINFPDYKGIACCKQGSCGDTIGNIRILTGY 659
           LGPVIW    K  P G     N  +  +  P  KG          D I N    TGY
Sbjct: 411 LGPVIWPGKSKDVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKI-DPISNAMTPTGY 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,197
Number of Sequences: 28952
Number of extensions: 336468
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)