Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40202
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    26   0.42 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.9  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +3

Query: 693 GSWIKENLNIN----HMIPILLDLKLTAIGDMHYGH 788
           G W ++NLN N    H I    D +  AIG   YGH
Sbjct: 224 GEWQRDNLNANSSITHWILSGADPQKLAIGIAFYGH 259


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 443 KCMIKTIKLVLIISHLVNKITIL 375
           KC+  T+K++ I+++LV  + +L
Sbjct: 61  KCLEITVKILKIVAYLVTFVIVL 83


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 443 KCMIKTIKLVLIISHLVNKITIL 375
           KC+  T+K++ I+++LV  + +L
Sbjct: 61  KCLEITVKILKIVAYLVTFVIVL 83


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 443 KCMIKTIKLVLIISHLVNKITIL 375
           KC+  T+K++ I+++LV  + +L
Sbjct: 61  KCLEITVKILKIVAYLVTFVIVL 83


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 443 KCMIKTIKLVLIISHLVNKITIL 375
           KC+  T+K++ I+++LV  + +L
Sbjct: 61  KCLEITVKILKIVAYLVTFVIVL 83


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 520 NHKFVLIKVKYMKQYLYEKMVC 585
           NH  + +  K++ QYL E++VC
Sbjct: 89  NHPHIQLP-KHVDQYLLEQLVC 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,789
Number of Sequences: 336
Number of extensions: 4512
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)