Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40202
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    43   6e-05
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.3  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.7  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    25   10.0 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   10.0 

>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +2

Query: 257 SYLDIFP--REKLVYLTPHCRNELTRFDPDAIYIIGCMVDK 373
           SYL+ F   +EKLVYL+    N +T  D D IYIIG +VDK
Sbjct: 168 SYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDK 208


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 153 IHLCNVNNDSEFLKQLKKNIPCMEEPWFPMN 245
           I  CNV +++EF  +    IP   +  FP N
Sbjct: 145 IEHCNVYSEAEFFSKFPAGIPTKRKDLFPCN 175


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 221 HAWNIFFKLFQEFTIIVYITQVNIEWFFMKSVVS 120
           H WNI  +   ++ ++ Y+    + +FFM S ++
Sbjct: 205 HFWNIIVQFSFDYLVVRYVGWRALAYFFMSSFLA 238


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 118 LETTDFIKNHSIFTCVM*TM-IVNS*NNLKKIFH 216
           L+ TDF+  HS+  C   +M I+ S N+L + F+
Sbjct: 20  LKFTDFVHQHSVEQCNQLSMYIIASVNSLAEAFY 53


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 247 IFIGNQGSSMHGIFFLSCFRNSLS 176
           +F+ N G S     + SCF NSLS
Sbjct: 283 VFLNNMGGSAGSGVWSSCFGNSLS 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,216
Number of Sequences: 5004
Number of extensions: 73058
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)