Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40202
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004     34   0.12 
09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513...    31   1.1  
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174...    28   7.9  

>02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004
          Length = 403

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 257 SYLDIFP--REKLVYLTPHCRNELTRFDPDAIYIIGCMVDK 373
           SYL+ F   +E LVYLT      L   D   IYIIG +VD+
Sbjct: 188 SYLEAFEDRKENLVYLTADAETVLDDLDMSKIYIIGGLVDR 228


>09_04_0612 -
           18950025-18950192,18950501-18950637,18951202-18951350,
           18951738-18951968,18952654-18952724
          Length = 251

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 332 QIWSIHCDNEE*GKLTFLLEKYLN---SFSMNIHWEPRFFHAWNIFFKLFQEF 183
           +IW    DN E  + TFLL K+L+    F +   +   +   W +F KLF +F
Sbjct: 169 KIWLAVIDNLEENQQTFLLLKHLSQEGEFFLPFPYSRSYKVLWRVFDKLFTDF 221


>11_01_0223 +
           1746203-1746228,1746344-1746463,1746942-1747062,
           1747441-1747572,1748266-1748375,1748465-1748648,
           1749153-1749305,1749672-1749818
          Length = 330

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 584 VMSFNGFRQIMNQFH*LKPRKIILQWQSYLWTGIWNGLLDQGKPEH*SHDSHIT*SEV 757
           ++ FN  RQI    H L+ +K++ ++  Y    I +  +    P H SHD+H+  + V
Sbjct: 63  MIPFNRLRQIT---HFLEQQKLVRRY--YRKEAIHDASISTASPSHVSHDAHLVPTNV 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,370,664
Number of Sequences: 37544
Number of extensions: 388076
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)