Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40202
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.006
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            29   3.5  
SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)                    29   3.5  

>SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 269 IFPREKLVYLTPHCRNELTRFDPDAIYIIGCMVD 370
           +FP+E ++YLT    N LT  D   +Y+IG +VD
Sbjct: 195 VFPKEDIIYLTSDSPNMLTELDMSKVYVIGGLVD 228


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 209 IFFKLFQEFTIIVYITQVNIEWFFMKSVVSKY*CHLLCSI 90
           I F  F  F  +++ + VN+ ++F+ ++   Y C  + S+
Sbjct: 876 ILFAYFASFKTLMFYSDVNVSFYFLAALCVAYLCAFIVSV 915


>SB_57881| Best HMM Match : FeoB_C (HMM E-Value=3.7)
          Length = 162

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 209 IFFKLFQEFTIIVYITQVNIEWFFMKSVVSKY*CHLLCSI 90
           +   +F     + Y + VNI W F+ +V + Y C  + S+
Sbjct: 102 VLLVIFTSTRTLFYYSDVNISWNFLSAVSAAYLCAFIVSV 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,518,656
Number of Sequences: 59808
Number of extensions: 483352
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)