Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40202
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47680.1 68418.m05886 expressed protein contains Pfam profile...    32   0.41 
At5g38810.1 68418.m04693 F-box family protein predicted proteins...    29   3.8  
At2g14290.1 68415.m01598 F-box family protein contains F-box dom...    28   6.6  

>At5g47680.1 68418.m05886 expressed protein contains Pfam profile
           PF04243: Protein of unknown function (DUF425)
          Length = 344

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 278 REKLVYLTPHCRNELTRFDPDAIYIIGCMVDK 373
           ++ LVYLT      L   DP  IYIIG +VD+
Sbjct: 197 KDNLVYLTADSETVLDDLDPKHIYIIGGLVDR 228


>At5g38810.1 68418.m04693 F-box family protein predicted proteins,
           Arabidopsis thaliana
          Length = 259

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 117 FGDNRLHKEPFNIHLCNVNNDSEFLKQLKKNIPCMEEPWFPMNIHTKAI*IFFQEKS*FT 296
           F ++    E  N+++C+  + +E LK  K   P   EP++   +    +  +F   S F 
Sbjct: 87  FHNHMKFHEDMNLYMCSYVSGTENLKWRKMICPLTHEPYYGRALSINGVLYYFARTSCF- 145

Query: 297 LLLIVAMN 320
             L+V+ N
Sbjct: 146 --LVVSFN 151


>At2g14290.1 68415.m01598 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 353

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 135 HKEPFNIHLCNVNNDSEFLKQLKK--NIPCMEEPWF 236
           HKE FN+ LC  N +++ LK+     N+   +  WF
Sbjct: 314 HKEHFNLDLCVFNLETKTLKRFPSLANMKLKDAQWF 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,542,221
Number of Sequences: 28952
Number of extensions: 353399
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)