Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40199
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.92 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   2.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 245 SLEYSKRSS*LARPCSIQMLLSLKSGDCSQSEWCTEFLQRRKHS 114
           +L  S R+  LAR C    LL L       + +    +QRR H+
Sbjct: 237 ALVTSPRARPLARTCRDNRLLVLAGTSSPSNRFTRHLIQRRTHT 280


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 694 FRETGNLLLDFSTNLMGWL 750
           FRETG   LD S NL+G L
Sbjct: 340 FRETGLERLDVSHNLLGKL 358


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 725 KSNNKLPVSRKRNSLLRKLE--SLNGT*TVPLTLETFHTH*FIRKYIMYLLVSQLVFFSF 552
           K   KL V +  NSL   L+   + G  T   T   F +    +  I+Y ++ Q++F SF
Sbjct: 18  KMEEKLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSS---KLLILYNIILQVLFVSF 74

Query: 551 ITH 543
           +++
Sbjct: 75  VSY 77


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 NNVFSHHFGHGNVY 301
           +NV S+ +G+GN Y
Sbjct: 72  SNVLSNGYGYGNYY 85


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 NNVFSHHFGHGNVY 301
           +NV S+ +G+GN Y
Sbjct: 72  SNVLSNGYGYGNYY 85


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 80  ELSWQPSMKKISNVSVSEETLYTTLTANSPPTLVIAASESNTVG 211
           E++W+   +++SN   ++   Y T+  +    L I A  +N  G
Sbjct: 444 EITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGG 487


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 713 KLPVSRKRNSLLRKLE--SLNGT*TVPLTLETFHTH*FIRKYIMYLLVSQLVFFSFITH 543
           KL V +  NSL   L+   + G  T   T   F +    +  I+Y ++ Q++F SF+++
Sbjct: 4   KLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSS---KLLILYNIILQVLFVSFVSY 59


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 NNVFSHHFGHGNVY 301
           +NV S+ +G+GN Y
Sbjct: 72  SNVLSNGYGYGNYY 85


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 342 NNVFSHHFGHGNVY 301
           +NV S+ +G+GN Y
Sbjct: 72  SNVLSNGYGYGNYY 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,108
Number of Sequences: 336
Number of extensions: 4086
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)