Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40199
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    30   0.44 
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    30   0.44 
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   4.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   7.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   7.1  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 92   QPSMKKISNVSVSEETLYTTLTANSPPTLVIAASESNTVGPAKSFALN 235
            Q S+  +   S  ++ L T+ T N P T  + A+E     PAK + ++
Sbjct: 1052 QDSLNSVDQSSGKDKLLLTSSTPNKPTTFFMPANEEILGSPAKDYDIH 1099


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 262 PNFYVVTIPGGHDVHITMPEVVAEYIVKFLN 354
           P + +V++  GH VH   P+  +E I+ FLN
Sbjct: 239 PKYELVSLDCGHWVHFEKPKEFSESIINFLN 269


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 14  LSEEQAEVILARSLNPVAGDKFELSWQPSM 103
           LS+E    +   +L+P+ GD + + W+P M
Sbjct: 460 LSKEDDVRLSFATLDPIVGDIYSVFWEPEM 489


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +2

Query: 5   NRSLSEEQAEVILARSLNPVAG--DKFELSWQPSMKKISNVSVSEETLYTTLTANSPPTL 178
           N S S     V+   +L PV    +K  L+W PS   +   S     +   ++   PP +
Sbjct: 76  NNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPSSANLFGTSKVTSIIGNNVSDVVPPVI 135

Query: 179 VIAASESNTVGPAKSFAL 232
             A + S+  G + S  L
Sbjct: 136 KKALASSHGGGMSLSIVL 153


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 559 KKTNCETKRYIIYFLIN*WVWNVSRVNGTVQVPFKLSNFLNKLFRFRETGNLLLDFSTNL 738
           K+   ++ +  IY LIN   + V  +   +  P    N L K +R  +    LLD+   L
Sbjct: 527 KQATSQSSQQWIYKLINRAAYEVKALESHMTTPLLTYNILIKPYRNAKRRLFLLDYDGTL 586

Query: 739 M 741
           +
Sbjct: 587 I 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,793
Number of Sequences: 5004
Number of extensions: 69168
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)