Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40199
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     28   7.4  
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247...    28   7.4  

>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +2

Query: 62  VAGDKFELSWQPSMKKISNVSVSEETLYTTLTANSPPTLVIAASESNTVGPAK 220
           V  DKF       +KK+  V  + +TL+  ++ +S    ++  +++    P K
Sbjct: 119 VGTDKFRRKLTDMLKKLDEVKTTADTLFKLVSFDSATAKLLPVTQARVTSPLK 171


>04_04_1334 -
           32723950-32724121,32724527-32724558,32724665-32724708,
           32724962-32725123,32725984-32726422
          Length = 282

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 281 PYPEAMTYTLPCPKWWLNTL 340
           PYP   +YTLP   WW   L
Sbjct: 64  PYPAPGSYTLPGSPWWAENL 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,244,971
Number of Sequences: 37544
Number of extensions: 395549
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)