Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40199
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       30   1.9  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.5  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.5  
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)                 28   10.0 

>SB_29053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 268 FYVVTIPGGHDVHITMPEVVAEYIVKFLNYKRNK 369
           ++   +PG H VH+  PEVVA  I ++L+ + ++
Sbjct: 275 YFYHEVPGNHFVHLNEPEVVARVIREYLDRRASR 308


>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 399 LNLRFDHTPQFISFVV*KLNNVFSHHFGHGNVYVMASG 286
           LN+ FD   +FI      L+ +++ HFG G V  MA G
Sbjct: 376 LNVSFDELREFIGSASIGLHTMWNEHFGIGVVECMAGG 413


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 23   EQAEVILARSLNPVAGDKFELSWQPSMKKISNVSVSEETLYTTLTANSPPTLVIA 187
            EQ  +++ +SL  VA DKF L  +   K  S  S S          + PP  V++
Sbjct: 1409 EQGVILVDKSLTTVAADKFSLKVEARDKNASPRSGSVTVEINVYLPDGPPMFVVS 1463


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = -2

Query: 689 NSLLRKLESLNGT*TVPLTLETFHT--H*FIRKYIMYLLVSQLVFFSFI 549
           N LLR L S+    TVPLT +      + FIR  ++Y+LV+++  +SFI
Sbjct: 244 NFLLRSLTSV----TVPLTQQVLSVPLYSFIRIGLIYVLVNRVPLYSFI 288


>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 223  LRFEYSREMPNILPNFYVVTIPGGHDVHITMPEVVAEYIVKFLNYKRNKLWSMIKS 390
            LR E  +EM NI+  FY   +   +D+ I+  + + +YI +  ++K+ ++   I S
Sbjct: 983  LRQENIKEMRNIVKEFYQRLVAKINDLKISHKKYLKDYIKQTKSWKKGEVNESIDS 1038


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 56   NPVAGDKFELSWQPSMKKISNVSVSEETLYTTLTANSPPTLVIAASESNTVGPAKSFALN 235
            NPV  D+    WQP     ++V  +  TL+T +T    P ++ ++ +S  V       LN
Sbjct: 1100 NPVVKDR---EWQPQTFNFNDVPQAMLTLFTVMTFEGWPGILESSMDSTDVDEGP--FLN 1154

Query: 236  ILEKCQIFYLISML 277
                  I+Y+I ++
Sbjct: 1155 NRPWVAIYYVIYII 1168


>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
          Length = 692

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 125 VSEETLYTTLTANSPPTLVIAASESNTVGPAKSFALNILEKCQ 253
           V + T+Y  +  NSP  L   A++ N+   A++  LN  +KC+
Sbjct: 452 VDDATVYEIVPRNSPSYLPFVANDINSYALARNMRLN-AKKCK 493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,652,743
Number of Sequences: 59808
Number of extensions: 462350
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)