Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40197
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 79 3e-15
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 77 1e-14
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 4.6
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 29 4.6
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 6.1
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 79.4 bits (187), Expect = 3e-15
Identities = 37/82 (45%), Positives = 53/82 (64%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKK 439
LR ED + + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG IW+
Sbjct: 325 LRIQVEEDLKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRT 384
Query: 440 GYDKGDIKGHVYDDVLPALEQW 505
G++ +++G V+DDV AL+ W
Sbjct: 385 GFESKELQGVVFDDVPEALKHW 406
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE +
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDI 322
Score = 52.0 bits (119), Expect = 6e-07
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 517 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVG 636
G K+YIYSSGS +AQ+LLFG ++ GDL + G FDT G
Sbjct: 410 GMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTG 449
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 77.4 bits (182), Expect = 1e-14
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQLQGLI 430
LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQLQG I
Sbjct: 954 LRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRI 1012
Query: 431 WKKGYDKGDIKGHVYDDVLPALEQWR 508
W++G+D G+++ VYDD AL +WR
Sbjct: 1013 WRRGFDSGELRSEVYDDAADALRRWR 1038
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 KIYIYSSGSVQAQKLLFGQSSA-GDLLPLIDGHFDTAVGAKQEATSYTAIVEKIG 684
K YIYSSGS +AQ+L+F ++A GDL + G FDT +GAK+E +SY I + +G
Sbjct: 1040 KAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLG 1094
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +3
Query: 72 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEA 251
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + + A
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 29.1 bits (62), Expect = 4.6
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Frame = +2
Query: 290 KSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGY-DK--GDI 460
K+ EG V I + A + L + WQ S + + +L+ L W Y DK +I
Sbjct: 736 KTTEGCVEINVDGAQLRIMLTNLKVSPVWQKVSPQDNIFICELRILTWGDVYVDKVITEI 795
Query: 461 KGHVYDDVLPALEQWRQ*RV---RRFTSTPLDPSKPRNFFLASHL--LGTYFLSSMAIS 622
KG +YD + + Q + ++ S PL P + ++SH LG + +A++
Sbjct: 796 KGDLYDSPIDSKNQIVMSTLYNNDQYQSYPLCPIEAALLSMSSHTYSLGEELIGKVALT 854
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 63 SVEMAKENTV-IGDIVKKSKVLL--LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDD 233
SV+MA E +V V+ ++ L + +E T+++ +K+ LFP E + A+W+D
Sbjct: 479 SVQMALERSVGYSGRVEAARATLDQVKVEDIDTNVAVLKELLFPLIEIGKRLLFLAEWED 538
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 347 IEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 463
+EG +K + Q+ D+KVA K + I GY++GD K
Sbjct: 462 LEGTLK-IDQQIEGDQKVANKKVTEEEILTNGYEQGDAK 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,823,097
Number of Sequences: 37544
Number of extensions: 502900
Number of successful extensions: 1240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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