Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40197
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)                 66   3e-11
SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)             34   0.17 
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             29   6.2  

>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
          Length = 157

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/62 (46%), Positives = 39/62 (62%)
 Frame = +2

Query: 323 EDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 502
           E A     +E L+  +   M  DRK   LK LQG+IW++GY  GD  GH+Y DVLP+LE+
Sbjct: 14  EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73

Query: 503 WR 508
           W+
Sbjct: 74  WK 75



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +1

Query: 514 EGQKIYIYSSGSVQAQKLLFGQS 582
           +G  +Y+YSSGSV AQKLLFG S
Sbjct: 77  QGIDLYVYSSGSVAAQKLLFGYS 99


>SB_39750| Best HMM Match : Borrelia_orfA (HMM E-Value=1.1)
          Length = 810

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 30/116 (25%), Positives = 45/116 (38%)
 Frame = +2

Query: 272 AIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDK 451
           AIE   K  E       +  SKED+ +  V+ +  Q+  + ++  L  L  + W  G D 
Sbjct: 23  AIELARKLEEEKKKAVSDKESKEDK-DSFVEKLAMQVVKNLQLMELNSLS-MYWNTGDDI 80

Query: 452 GDIKGHVYDDVLPALEQWRQ*RVRRFTSTPLDPSKPRNFFLASHLLGTYFLSSMAI 619
           G          LP  E+W          T    SKP  F    H +G Y++ S  +
Sbjct: 81  GK---------LPTKEEWPTIAKEGIARTMKGFSKPEGFKYGKHCIGLYYMDSSIV 127


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 302 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYD 448
           G +  PGED +K+D I+ L + ++ +  S R++    +L+GL++ K  D
Sbjct: 201 GHLAPPGEDKTKQDLIQNLGR-LRQRRRSIREIQNRDELEGLMYVKQGD 248


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 118 LLFLTISPITVFSFAISTDPHQLCRNYF-YVFQNLFD*NS 2
           L FL  SP  VFSF +   P  LC  +F +  Q L   NS
Sbjct: 253 LFFLCWSPTVVFSFLVLFGPPGLCMKHFRFTSQFLVQSNS 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,978,082
Number of Sequences: 59808
Number of extensions: 549206
Number of successful extensions: 1423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)