Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40197
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa...    76   3e-14
At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase fa...    76   3e-14
At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase fa...    75   8e-14
At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5)...    32   0.41 
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    30   1.7  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    29   2.9  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    29   3.9  
At5g11910.1 68418.m01393 esterase/lipase/thioesterase family pro...    29   5.1  
At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof...    29   5.1  
At5g46420.1 68418.m05713 16S rRNA processing protein RimM family...    28   6.8  
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ...    28   8.9  

>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 418

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 324 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 383

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRR 526
           G IW+ G++  ++K  V++DV  ALE+W    ++R
Sbjct: 384 GHIWRTGFECDELKAIVFEDVADALEKWHSSGIKR 418



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 284 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 327


>At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 402

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 308 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 367

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQWRQ*RVRR 526
           G IW+ G++  ++K  V++DV  ALE+W    ++R
Sbjct: 368 GHIWRTGFECDELKAIVFEDVADALEKWHSSGIKR 402



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 311


>At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 507

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 36/88 (40%), Positives = 51/88 (57%)
 Frame = +2

Query: 242 QRSSDALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQ 421
           Q     LR    ED  + V G V IP  D  KE  I  +V NV+  + +DRK+  LK+LQ
Sbjct: 308 QEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQ 367

Query: 422 GLIWKKGYDKGDIKGHVYDDVLPALEQW 505
           G IW+ G++  ++K  V++DV  ALE+W
Sbjct: 368 GHIWRTGFECDELKAIVFEDVADALEKW 395



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 32/56 (57%), Positives = 38/56 (67%)
 Frame = +1

Query: 517 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKIG 684
           G K+YIYSSGS  AQKLLFG +  GDL   I G FDT +G K+E+ SY  I E +G
Sbjct: 399 GIKVYIYSSGSRLAQKLLFGNTDYGDLRKYISGFFDTTIGNKKESRSYKEIKETLG 454



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +3

Query: 123 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
           ++LDIEGTTT I+FV D LFPYA ENV   L+  +   + +E +
Sbjct: 268 IVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDI 311


>At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 368

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 105 VKK-SKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
           VKK   V+L +++ TTT+I  V D++    E   ++FL+ +  D DVK A+
Sbjct: 223 VKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFLEQKLSD-DVKPAI 272


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 323 EDASKEDQIEGLVKNVKWQ--MSSDRKVAPLKQLQGLIWK 436
           +DA    Q+EG+VK +KW+  M+  ++   L  +Q  IW+
Sbjct: 778 DDAETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWR 817


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 152  CCSSFNIKK--QNFAFLNNIADYSILFCHFDRSTPALPELL 36
            C S  NI+   ++F  LNN+  + + FC   +S P LP+ L
Sbjct: 884  CLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNL 924


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 489 GSTSSYTCPLMSPLS*PFFQISPWSCFRGATLRSDDICHLTF 364
           GS +SY     S +S    ++SPW C    T    ++C  TF
Sbjct: 403 GSLNSYKTWKCSDVSGTSLKVSPWPCSELRTTGGSNLCSSTF 444


>At5g11910.1 68418.m01393 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 297

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -2

Query: 783 GFT*SQRPLPLVRAASASFFKYQLKTRISFSFATDFLDNGSVTGSFLFSTY 631
           GF  S+  +P++  AS  FF+   +  IS SF  DF  NG   GSF +  Y
Sbjct: 52  GFRSSKNRIPMLTIAS--FFE---RAMIS-SFRFDFAGNGESQGSFQYGNY 96


>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 629

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  ILKYIKVVPAELVWICRNGKREYCNRRYC 106
           +LKY+K     + WICR   +++  R+ C
Sbjct: 201 VLKYVKKNLKWIAWICRTCSKKFSTRQAC 229


>At5g46420.1 68418.m05713 16S rRNA processing protein RimM family
           contains weak similarity to Swiss-Prot:O74933
           UDP-N-acetylglucosamine pyrophosphorylase [Candida
           albicans]; contains Pfam profiles PF01782: 16S rRNA
           processing protein RimM, PF05239: PRC-barrel domain
          Length = 653

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 555 SPETSFWPVICWGPTSSHRWPFRHCCRC*TGSYQLHCHCRENRLQS*RKSLFLT 716
           S   +F P+  + P SSHR+P     R  +   +  CH   + L++  KS FLT
Sbjct: 10  STSITFTPIQLFNPNSSHRFPRFELSRPVSALSRTKCHL--SLLRARGKSSFLT 61


>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 957

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 66  VEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFL 215
           +++  +N     +++K    L ++  +TTS S    KL    EEN+  FL
Sbjct: 481 IDVPHQNDTAVSVLEKMASTLEELHASTTSNSAFGTKLLEEGEENIGHFL 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,779
Number of Sequences: 28952
Number of extensions: 403938
Number of successful extensions: 1147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)