Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40196
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 102 3e-23
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 101 5e-23
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.4
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 1.8
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 5.6
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 25 5.6
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 7.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.3
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 7.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 9.7
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 9.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.7
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.7
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 102 bits (245), Expect = 3e-23
Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 435
+PK+++AAL T+ ARARIL AGGE+LT DQLALRAPTG TVLV+G+++AREA RHFG
Sbjct: 97 VPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG- 155
Query: 436 APGAPRSHTKPYVRTKGH--EKAR 501
P H PYVR++G E+AR
Sbjct: 156 --FGPHKHKAPYVRSEGRKFERAR 177
Score = 56.0 bits (129), Expect = 3e-09
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 5 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA--R 178
+K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 11 KKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALT 70
Query: 179 HMKKPTREGLIAVVVGTVTND 241
K + + VVVGTVT+D
Sbjct: 71 SRKSASSQNKTTVVVGTVTDD 91
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 101 bits (243), Expect = 5e-23
Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 435
+PK++VAAL T+ ARARIL AGGE+LT DQLALRAPTG TVL++G+++AREA RHFG
Sbjct: 97 VPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG- 155
Query: 436 APGAPRSHTKPYVRTKGH--EKAR 501
P H PYVR++G E+AR
Sbjct: 156 --FGPHKHKAPYVRSEGRKFERAR 177
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +2
Query: 5 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA--R 178
RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 11 RKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALT 70
Query: 179 HMKKPTREGLIAVVVGTVTND 241
K + EG V+VGTVT+D
Sbjct: 71 SRKSASLEGKTTVIVGTVTDD 91
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 339 SKNFSSSSQNACTSFFGNMKSSHRH 265
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 317 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 457
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -2
Query: 471 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 307
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 306 CTSFF 292
C+SFF
Sbjct: 364 CSSFF 368
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 492 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 331
F+S G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 631 FLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 285 MKSSHRHLRYLYSLTSFVTVPTTTAIKPSRVGF 187
+K +HRHL L SL ++PT ++ + GF
Sbjct: 69 IKKAHRHLEQLKSLLE--SLPTNNELEETDAGF 99
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 343 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 438
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 377 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 466
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.3
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -2
Query: 414 LTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYSLTSF 235
LTS + T + S ST S + + S +S+++ SF+ N+ +S + TSF
Sbjct: 641 LTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESS--SFYSNVTTSSSTVSTPPPTTSF 698
Query: 234 VTVPTTTAIKPS 199
+ TT+ I S
Sbjct: 699 PSTFTTSFITSS 710
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = -2
Query: 363 STKSQLIKSKNFSSSSQNACT----SFFGNMKSSHRHLRYLYSLTSFVTV 226
ST ++ + S F S + S F N+ S H RYL+ T F TV
Sbjct: 361 STVNEFVNSIQFYESQLSLVLMEIESKFSNIDGSDIHFRYLFLKTVFWTV 410
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.7
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -2
Query: 438 SRAKVTHCLTSI--SLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 265
S +T TSI S+ LA+ T + L + + +S S ++S+ H
Sbjct: 180 SPTSITTTSTSIDPSVAFSSKSTLATTRTNAPLSRPSQPTKASPLNKFSALEAIQSARSH 239
Query: 264 LRYLYSLTSFVTVPTTTAI 208
RY YS + TTTAI
Sbjct: 240 ARYAYSALDY--EDTTTAI 256
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 370 GKKTVLVQGQRNAREAVRHFGPAPGA-PR 453
G+ L Q +R V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 328 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 420
E+L D +L P+GK T LV + + +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 324 SSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTTTAIKPS 199
S+ + ++ GN SS +L SL S + P+T+ I S
Sbjct: 359 SNKSSGSSTVLGNNSSSKSENSFLASLISNINQPSTSRIDTS 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,065
Number of Sequences: 5004
Number of extensions: 43322
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -