Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40196
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 126 1e-29
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 124 4e-29
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 105 2e-23
01_06_0579 + 30379243-30379617 29 1.8
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.4
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 4.3
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 28 4.3
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 28 5.6
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 5.6
01_05_0766 - 25026487-25027224 28 5.6
02_05_0598 + 30250535-30251218 27 7.5
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 9.9
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.9
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 27 9.9
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 126 bits (304), Expect = 1e-29
Identities = 62/85 (72%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 QIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
+IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAVRHFG
Sbjct: 94 EIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFG 153
Query: 433 PAPGAPRSHTKPYVRTKGH--EKAR 501
APG P SHTKPYVR+KG EKAR
Sbjct: 154 KAPGVPHSHTKPYVRSKGRKFEKAR 178
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +2
Query: 2 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 181
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 182 MKKPTREGLIAVVVGTVTND 241
M + E IAV+VGTVT+D
Sbjct: 71 M-EGKEENNIAVIVGTVTDD 89
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 124 bits (300), Expect = 4e-29
Identities = 60/85 (70%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 QIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFG
Sbjct: 101 EVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFG 160
Query: 433 PAPGAPRSHTKPYVRTKGH--EKAR 501
PAPG P S+TKPYVR+KG EKAR
Sbjct: 161 PAPGVPHSNTKPYVRSKGRKFEKAR 185
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Frame = +2
Query: 2 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 181
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 182 M--KKPTREGL----IAVVVGTVTND 241
M K P R + IAV+VGTVT+D
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDD 96
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 105 bits (253), Expect = 2e-23
Identities = 59/106 (55%), Positives = 70/106 (66%), Gaps = 19/106 (17%)
Frame = +1
Query: 241 RETVQIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------------- 381
+ ++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 89 KRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNF 148
Query: 382 ----VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKAR 501
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR
Sbjct: 149 ALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKAR 194
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +2
Query: 2 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 181
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 182 MKKPTREGLIAVVVGTVTND 241
M+ +E IAV+VGTVT+D
Sbjct: 71 ME--GKENQIAVIVGTVTDD 88
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 254 CTVSRHL*LSPLPRQSNPHELASS 183
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 225 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 121
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 492 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 313
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 312 NACTSFFG-NMKSSHRHLRY 256
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 347 SWLFVLRLARRQYWYKVSEMLVRQCV-TLALLQEHRALTLNPMFAPRDMKKQGPVS 511
SW V L + Q+WY VS+ L + A + + + LNP M P S
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNPGLVLGPMLMPSPTS 254
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 369 SRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYSLTS 238
SRSTK +L NF + T++ N KSS R + LY++++
Sbjct: 834 SRSTKQKLETFVNFPIHDFDL-TNYIANKKSSERQIYELYAVSN 876
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 335 LLLISWLFVLRLARRQYWYKVSEML 409
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>01_05_0766 - 25026487-25027224
Length = 245
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 394 GQRNAREAVRHFGPAPGAPRSHTKPYVRTK-GHEKARPSLVLMSNF*YKDYT 546
GQ N R V PA GAP T P +RT G + +PS V NF D T
Sbjct: 31 GQCNYRVPV---SPAFGAPSGMTSPQLRTSLGGFEFQPSKVCPRNFIIFDQT 79
>02_05_0598 + 30250535-30251218
Length = 227
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 335 RISP-PAAKMRARAFSVT*RAATVIFGICTVSRHL*LSPLPRQSNPHELASSCGAPNETQ 159
R +P PA + +AR + A G+ L +P PR SNP+ + GA
Sbjct: 18 RAAPVPALRSQARHPLLLGHAGETALGVWATRARL-PAPPPRASNPNNDNDNSGAVEAPD 76
Query: 158 RLVA 147
RLVA
Sbjct: 77 RLVA 80
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 207 KPSRVGFFMWRAKRDTEIG 151
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 115 STPALYEPYQPATNLCV-SFGAPHEEANS 198
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 360 CSDWQEDSTGTRSAKCS*GSASLWPCSRSTALSH 461
CS E + G +C G W C +T L+H
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,105
Number of Sequences: 37544
Number of extensions: 317465
Number of successful extensions: 912
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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