Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40196
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   6e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      28   4.4  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   28   4.4  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   7.6  
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   7.6  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   7.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
 Frame = +1

Query: 253 QIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
           ++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+QG R AREA RH G
Sbjct: 201 EVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAERHMG 260

Query: 433 PAPGAPRSHTK-----PYVRTKGHEKAR 501
            APG P S T       Y+ T G  + R
Sbjct: 261 LAPGVPHSDTNWCGDLDYIGTDGDAQCR 288



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 47/79 (59%)
 Frame = +2

Query: 5   RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 184
           +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S++RL R M
Sbjct: 118 KKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLVRKM 177

Query: 185 KKPTREGLIAVVVGTVTND 241
           K    +  I VVVG++T+D
Sbjct: 178 KASGHKDKICVVVGSITDD 196


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 366 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYS 247
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y  S
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSYTAS 55


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 325 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 456
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 409  REAVRHFGPAPGAPRSHTKPYVRTKGHEKARPSLV 513
            ++AV+   PAP APR    P V+  G ++  P L+
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = -2

Query: 378 LLASRSTKSQL---IKSKNFSSSSQNACTSFFGNM-KSSHRHLR-YLYSLTSFVTVPTTT 214
           +L +++T+ Q    + SK   S S N    F  +M ++S R+ + Y Y + +F      T
Sbjct: 150 ILFTKNTEQQFSAGLVSKCLVSFSNNGRNDFMVDMMEASLRYPQDYSYYIQNFTAFQYNT 209

Query: 213 AIKPSRVGFFMWRAKRDTEIGGR 145
            +KP     F +  +     GGR
Sbjct: 210 VVKPGHQASFEYAFRPHESFGGR 232


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 359 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 484
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 359 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 484
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 313 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 430 GPAPGAPRSHTKPYVRTKGHEKARPSLVLMS 522
           G  P AP+   +P+   KG +KA    VL++
Sbjct: 346 GQKPEAPKEEVRPFAEEKGPKKAERRRVLLA 376


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 223 HYHGNQTLTSWLLHVARQTRHRDWW 149
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 534 ILKIRH*HETGPCFFMSLGANIGFSVRARCSWSRA 430
           I KIR  + + P F  SL  N+  +    CSW RA
Sbjct: 398 IRKIREKYISNPDFHPSLIKNVSSACEGLCSWVRA 432


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 444  SWSRAKVTHCLTSISLTLYQY 382
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,601
Number of Sequences: 59808
Number of extensions: 348380
Number of successful extensions: 929
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)