Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40196
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   128   3e-30
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    33   0.18 
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    28   5.1  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    28   5.1  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    27   6.7  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/84 (71%), Positives = 72/84 (85%), Gaps = 2/84 (2%)
 Frame = +1

Query: 256 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 435
           +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+AREA +HFGP
Sbjct: 95  VPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGP 154

Query: 436 APGAPRSHTKPYVRTKGH--EKAR 501
           APG P SHTKPYVR+KG   E+AR
Sbjct: 155 APGVPHSHTKPYVRSKGRKFERAR 178



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 33/80 (41%), Positives = 44/80 (55%)
 Frame = +2

Query: 2   DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 181
           DR  RRT  KS++                T  KFN IVL+RL MSR NR P+S+++LAR 
Sbjct: 10  DRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARA 69

Query: 182 MKKPTREGLIAVVVGTVTND 241
           ++K   E    V + TVT+D
Sbjct: 70  VQKAGNENKTVVTLSTVTDD 89


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = -2

Query: 387 QYCLLASRSTKSQ---LIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTT 217
           +YC      T+SQ   + K +  S+  +N CTS FG++       R+LY L    T+  +
Sbjct: 330 RYCADVYNETESQNTDVCKFQKLSTLKEN-CTSLFGDVVVDANDGRFLYKLFYVGTIFGS 388

Query: 216 TAIKPSRVG--FFMWRAKRDTEIGGRLIRLIK 127
             I+ S++   FF+        + GR +R+ +
Sbjct: 389 LKIQYSKIEGLFFLSNLVTIANLDGRNLRIFR 420


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 100 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*R 243
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFR 164


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 100 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*R 243
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFR 248


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 387 QYCLLASRSTKSQLIKSKNFS--SSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTTT 214
           +YC          L K   FS  SSS+  CT+  GN+       RYLY L     +  T 
Sbjct: 330 KYCSQNLAKKIPYLTKPCAFSKLSSSEENCTALVGNVVVDANDGRYLYKLFKIKYIFGTL 389

Query: 213 AIKPSR 196
            I+ S+
Sbjct: 390 KIQYSK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,016
Number of Sequences: 27780
Number of extensions: 262715
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)