Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40196
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 122 1e-28
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 120 5e-28
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 109 2e-24
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.38
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.5
At1g76980.1 68414.m08963 expressed protein 29 2.0
At2g41600.2 68415.m05140 expressed protein 29 2.7
At2g41600.1 68415.m05141 expressed protein 29 2.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 3.6
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 3.6
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 28 3.6
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 3.6
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 28 4.7
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 4.7
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 28 4.7
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 27 6.2
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 8.3
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 8.3
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 122 bits (295), Expect = 1e-28
Identities = 59/85 (69%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 QIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
+IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFG
Sbjct: 93 EIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFG 152
Query: 433 PAPGAPRSHTKPYVRTKGH--EKAR 501
PAPG P SH+KPYVR KG EKAR
Sbjct: 153 PAPGVPHSHSKPYVRAKGRKFEKAR 177
Score = 67.3 bits (157), Expect = 6e-12
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +2
Query: 5 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 184
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 185 KKPTREGLIAVVVGTVTNDV 244
+E IAV+VGT+T+D+
Sbjct: 72 --TGKEDKIAVLVGTITDDL 89
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 120 bits (290), Expect = 5e-28
Identities = 59/85 (69%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 QIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 432
+IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFG
Sbjct: 93 EIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFG 152
Query: 433 PAPGAPRSHTKPYVRTKGH--EKAR 501
PAPG P S+TKPYVR KG EKAR
Sbjct: 153 PAPGVPHSNTKPYVRHKGRKFEKAR 177
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +2
Query: 5 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 184
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 185 KKPTREGLIAVVVGTVTNDV 244
++ IAV+VGT+T+D+
Sbjct: 72 --TGKDDKIAVLVGTITDDL 89
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 109 bits (261), Expect = 2e-24
Identities = 52/78 (66%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFG 432
+P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G +N REAV+HFG
Sbjct: 41 VPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFG 100
Query: 433 PAPGAPRSHTKPYVRTKG 486
PAPG P SHTKPYVR G
Sbjct: 101 PAPGVPHSHTKPYVRQTG 118
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +2
Query: 131 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDV 244
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DV
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGTVTDDV 36
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 433 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 341
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 328 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 420
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At1g76980.1 68414.m08963 expressed protein
Length = 258
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 369 SRSTKSQLIKSK-NFSSSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTTTAIKPSRV 193
S S +SQ + S+ N SS + +S N S LRY +L + P SR+
Sbjct: 196 SESRRSQSVVSRINSGSSKSSGGSSSRSNSDRSRNSLRYPQTLANLFRNPLRCFASSSRI 255
Query: 192 GFF 184
FF
Sbjct: 256 CFF 258
>At2g41600.2 68415.m05140 expressed protein
Length = 164
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 345 IKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTTT 214
IK SS Q C + SSH + Y + SFV+ P++T
Sbjct: 101 IKKPGLSSILQFHCRVYESGSGSSHFDIESAYFIRSFVSAPSST 144
>At2g41600.1 68415.m05141 expressed protein
Length = 151
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 345 IKSKNFSSSSQNACTSFFGNMKSSHRHLRYLYSLTSFVTVPTTT 214
IK SS Q C + SSH + Y + SFV+ P++T
Sbjct: 101 IKKPGLSSILQFHCRVYESGSGSSHFDIESAYFIRSFVSAPSST 144
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 340 FDQLALRAPTGKKTVLVQGQRNAREAV 420
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 340 FDQLALRAPTGKKTVLVQGQRNAREAV 420
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 255 LYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 121
LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 348 LYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 417 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 295
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 255 LYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 163
LY LTS + VPT T + S + F RA D
Sbjct: 378 LYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 104 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 211
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 255 LYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 163
LY LTS + VPT T + S + F RA D
Sbjct: 441 LYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 279 SSCYRKSSCTHFGCWRRNSYF 341
S+C RKS+ + C+ RN YF
Sbjct: 424 SACMRKSNGFGYSCYNRNCYF 444
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 328 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 420
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 328 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 420
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,596
Number of Sequences: 28952
Number of extensions: 240550
Number of successful extensions: 653
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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