Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40195
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   147   2e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.81 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.81 
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   7.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  147 bits (356), Expect = 2e-36
 Identities = 63/85 (74%), Positives = 78/85 (91%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRG
Sbjct: 68  VDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRG 126

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AII+ KLS++P+RRGYWG  +G PH
Sbjct: 127 AIIMGKLSIMPIRRGYWGTALGDPH 151



 Score = 95.5 bits (227), Expect = 8e-21
 Identities = 40/57 (70%), Positives = 49/57 (85%)
 Frame = +1

Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGKF 681
           VP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST T G F
Sbjct: 153 VPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIV 68


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 132 RAHDHGRDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 7
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 605 RSFFRWLVYRTATPQLVVQL 664
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -3

Query: 299 SLEPHHSGTGRGRNQDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 147
           +L PHH  TG  + +    +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 369 NLLPHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,775
Number of Sequences: 5004
Number of extensions: 75698
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)